Special

MmuEX0048179 @ mm9

Exon Skipping

Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45664285-45667772:-
Coord C1 exon
chr16:45667665-45667772
Coord A exon
chr16:45667251-45667442
Coord C2 exon
chr16:45664285-45664395
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATGGGTTGTTCTGTGCTAAGCTC
3' ss Score
3.29
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
CGTGTCCTGCAGGATCTTTTAGGTGCTCCTCCGGTTTGTGTGTCCCTCAGGCCCAGCGTTGTGACGGAGTGAATGACTGTTTCGACGAAAGTGATGAACTTTTCTGTG
Seq A exon
CTCCTTCCAGGTTGGCGTCATGGCTATTCTTTATGGCCCGGTCTTTCATGGAGTCAAGGAGCTAATAGAAACAAAAGCAAGGAAAAGTAAACATCAACACCTGGCTTCCAATAAGGGCTGGCCTTGCAAAACTTATATCATATTCTGTTGCTCCAAAGAAGTCGAATGGCTAAGCCCATGTTCAAGAGAGAG
Seq C2 exon
TGACTGTAAAACCTGCCTGCAACAGCAGCAGCTTCCGGCAGCATGGCCCTCTGGTCTGTGATGGCTTCCGGGACTGCGAGGATGGTCAGGACGAGCAAAACTGCACTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0005713=Ldl_recept_a=PD(94.6=94.6)

							
A:
NO

							
C2:
PF0005713=Ldl_recept_a=WD(100=55.3)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000044975f3101A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000044975





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000110209, ENSMUSP00000127789
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr3:111782731-111782940 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr1:57255382-57255580 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCTGCAGGATCTTTTAGGTGCT

				
R: 
CAGTTTTGCTCGTCCTGACCA

				
Band lengths: 
206-398

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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