MmuEX0048181 @ mm9
Exon Skipping
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45663382-45667772:-
Coord C1 exon
chr16:45667665-45667772
Coord A exon
chr16:45664285-45664395
Coord C2 exon
chr16:45663382-45663498
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGCCTTTCACCACAGTGA
3' ss Score
9.37
5' ss Seq
GAAGTGAGG
5' ss Score
3.71
Exon sequences
Seq C1 exon
CGTGTCCTGCAGGATCTTTTAGGTGCTCCTCCGGTTTGTGTGTCCCTCAGGCCCAGCGTTGTGACGGAGTGAATGACTGTTTCGACGAAAGTGATGAACTTTTCTGTG
Seq A exon
TGACTGTAAAACCTGCCTGCAACAGCAGCAGCTTCCGGCAGCATGGCCCTCTGGTCTGTGATGGCTTCCGGGACTGCGAGGATGGTCAGGACGAGCAAAACTGCACTAGAA
Seq C2 exon
GCATCCCATGCACCAGTAGGACCTTTAAATGTGGCAATGACATTTGCTTCAGGAAGCAAAATGCACAATGTGATGGTATAGTGGACTGTCCAGATGGAAGTGACGAGGAAGGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(94.6=94.6)
A:
PF0005713=Ldl_recept_a=WD(100=55.3)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAGGATCTTTTAGGTGC
R:
AGCCTTCCTCGTCACTTCCAT
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types