BtaEX6000890 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57254993-57258760:+
Coord C1 exon
chr1:57254993-57255100
Coord A exon
chr1:57257603-57257713
Coord C2 exon
chr1:57258644-57258760
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTGTTTTCCTTCCAGTGA
3' ss Score
10.93
5' ss Seq
GCAGTGAGC
5' ss Score
3.29
Exon sequences
Seq C1 exon
CCTGTCCTGTTGGATCTTTTAGATGCTCCTCCGGTGTGTGTGTCCCTCAGGCCCAGCGATGTGATGGAGTAAATGACTGCTTTGATGAAAGCGATGAACTCTTCTGTG
Seq A exon
TGACTCTAAAGCCTGCCTGCAATGCCAGCTCCTTCGGGCAGCAGAGCCCTCTGATCTGTGACGGCTTCCAGGACTGTGAGGATGGCCAGGACGAGCAGAACTGCACTCGCA
Seq C2 exon
GTATTCCATGCAATGACAGAACTTTTAAGTGTGGCAATGATGTTTGCATTAGGAAACAAAATGCAAAATGTGATGGCAACGTGGACTGTCCGGATGGAACCGATGAAGAAGGCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(94.6=94.6)
A:
PF0005713=Ldl_recept_a=WD(100=55.3)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTGGATCTTTTAGATGCTCCT
R:
ACAGCCTTCTTCATCGGTTCC
Band lengths:
219-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]