GgaEX6003945 @ galGal3
Exon Skipping
Gene
ENSGALG00000015389 | E1C7W0_CHICK
Description
NA
Coordinates
chr1:91909235-91911326:+
Coord C1 exon
chr1:91909235-91909342
Coord A exon
chr1:91909972-91910082
Coord C2 exon
chr1:91911210-91911326
Length
111 bp
Sequences
Splice sites
3' ss Seq
ACTTGACTCATGTTTTGAAGTTG
3' ss Score
3.41
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
CATGTCCACCCGGATATTTCAAGTGTTCTACTGGCTTATGCATTCAGCAGATGCAGCGCTGTGATGGGGTAAACAACTGCTTCGATGAAAGTGATGAACTCTTCTGTG
Seq A exon
TTGTCCCTGAGTGGAACTGTAACTCCAGCTTTGCGATACAGGATAACTTGCTTGTCTGCAATGGAGTAAATGATTGTGAGAATGGAGAAGATGAGCAGAACTGCACTGAAA
Seq C2 exon
GTATTCCTTGCACCAACCACACATTTAAGTGCAGGAATAACGTATGCATTAAGAAACAAAATGCAAAATGTGATGGGACTGTGGATTGTACTGATGGAAGTGATGAAAGCAGTTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015389-'12-13,'12-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(94.6=94.6),PF0005713=Ldl_recept_a=PU(5.4=5.4)
A:
PF0005713=Ldl_recept_a=PD(91.9=89.5)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACCCGGATATTTCAAGTGT
R:
ACTGCTTTCATCACTTCCATCAGT
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]