DreEX6094965 @ danRer10
Exon Skipping
Gene
ENSDARG00000086161 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr24:21702410-21703519:-
Coord C1 exon
chr24:21703412-21703519
Coord A exon
chr24:21702603-21702710
Coord C2 exon
chr24:21702410-21702526
Length
108 bp
Sequences
Splice sites
3' ss Seq
ACGTTATCTCTGTTCCACAGCTA
3' ss Score
8.88
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
CATGTCCAGACACCCACTTCCTGTGCTCCACGGGTCTGTGTGTGGAGAAATCCAAGCGCTGTGATGGACTGGATGACTGTCAGGATGAAAGCGATGAGATTTTCTGTT
Seq A exon
CTAAACCTCCTAAATTCTGTGGTGGTACATCCCCTTTGCACCCATTATACATTTGTAATGGAGAGATGGACTGTTCCAGTGGTAAAGATGAGACAAACTGTACTCAGG
Seq C2 exon
AGACTAGCTGTTCTGGAGTCAGTTATCAGTGTGACAATGGAGCCTGCATTCTTAAGAAAAATGCAAAATGTGATGGCTTTCCTGACTGCTTTGACCAGAGCGATGAAAAGAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086161-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(94.6=94.6),PF0005713=Ldl_recept_a=PU(2.9=2.7)
A:
PF0005713=Ldl_recept_a=PD(94.3=89.2)
C2:
PF0005713=Ldl_recept_a=WD(100=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCCAGACACCCACTTCC
R:
CTTTTCATCGCTCTGGTCAAAGC
Band lengths:
218-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]