HsaEX6057632 @ hg38
Exon Skipping
Gene
ENSG00000176040 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr3:112063525-112074412:+
Coord C1 exon
chr3:112063525-112063632
Coord A exon
chr3:112066392-112066502
Coord C2 exon
chr3:112074296-112074412
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTTTTTATTTTTTATTCTAGTGA
3' ss Score
8.16
5' ss Seq
AAAGTGAGG
5' ss Score
4.44
Exon sequences
Seq C1 exon
CCTGCCCTGTTGGATCTTTTAGATGCTCCTCCGGTTTATGTGTCCCTCAGGCCCAGCGTTGTGATGGAGTAAATGACTGCTTTGATGAAAGTGATGAACTGTTTTGCG
Seq A exon
TGAGCCCTCAACCTGCCTGCAATACCAGCTCCTTCAGGCAGCATGGCCCTCTCATCTGTGATGGCTTCAGGGACTGTGAGAATGGCCGGGATGAGCAAAACTGCACTCAAA
Seq C2 exon
GTATTCCATGCAACAACAGAACTTTTAAGTGTGGCAATGATATTTGCTTTAGGAAACAAAATGCAAAATGTGATGGGACAGTGGATTGTCCAGATGGAAGTGATGAAGAAGGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176040-'14-18,'14-17,15-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=FE(76.6=100)
A:
PF0005713=Ldl_recept_a=PD(19.1=23.7),PF0005713=Ldl_recept_a=WD(100=55.3)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCCTGTTGGATCTTTTAGA
R:
GCAGCCTTCTTCATCACTTCCA
Band lengths:
224-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains