MmuEX0048697 @ mm9
Exon Skipping
Gene
ENSMUSG00000021277 | Traf3
Description
TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]
Coordinates
chr12:112404674-112458132:+
Coord C1 exon
chr12:112404674-112404813
Coord A exon
chr12:112405210-112405318
Coord C2 exon
chr12:112458022-112458132
Length
109 bp
Sequences
Splice sites
3' ss Seq
ACTGAGTCATTGCTCTGCAGATG
3' ss Score
5.9
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TTTCCAGCCGGCGGCGGCGGCGGCGGCCGCCGGCCCTTCCCCGCCCCCCGACATGGGGCTGCCCGGGGAGCTGGACGCTGCAGAAGGCGGCGGAGGATGCGCGCGGCGCCCCTGAGCCGGCCGAACGGGCGGGCCTCGGG
Seq A exon
ATGAATGACTGATTCATAGTCGGAGAGCTGCAGAGAGGCTGGAAGGCAGGCGGTTCTGGGATCCAGCTGGGGCCGAATGCACACCTTCCACCTTCGATTAACACCAAAG
Seq C2 exon
GTACAGGGTCCCCATTACTTGAAGGATAAGGCTGGCACGGCTCCGACGTCTGTGTGGAAGCTTCTCCCTCCCTTCTGAGCTTCTCTAGACTCCTTACAGCGCACGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021277_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACGCTGCAGAAGGC
R:
CTGTGCCGTGCGCTGTAAG
Band lengths:
181-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: