MmuEX0048697 @ mm10
Exon Skipping
Gene
ENSMUSG00000021277 | Traf3
Description
TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]
Coordinates
chr12:111166463-111219921:+
Coord C1 exon
chr12:111166463-111166602
Coord A exon
chr12:111166999-111167107
Coord C2 exon
chr12:111219811-111219921
Length
109 bp
Sequences
Splice sites
3' ss Seq
ACTGAGTCATTGCTCTGCAGATG
3' ss Score
5.9
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TTTCCAGCCGGCGGCGGCGGCGGCGGCCGCCGGCCCTTCCCCGCCCCCCGACATGGGGCTGCCCGGGGAGCTGGACGCTGCAGAAGGCGGCGGAGGATGCGCGCGGCGCCCCTGAGCCGGCCGAACGGGCGGGCCTCGGG
Seq A exon
ATGAATGACTGATTCATAGTCGGAGAGCTGCAGAGAGGCTGGAAGGCAGGCGGTTCTGGGATCCAGCTGGGGCCGAATGCACACCTTCCACCTTCGATTAACACCAAAG
Seq C2 exon
GTACAGGGTCCCCATTACTTGAAGGATAAGGCTGGCACGGCTCCGACGTCTGTGTGGAAGCTTCTCCCTCCCTTCTGAGCTTCTCTAGACTCCTTACAGCGCACGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021277_MULTIEX1-1/2=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACGCTGCAGAAGGC
R:
CTGTGCCGTGCGCTGTAAG
Band lengths:
181-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types