MmuEX0050084 @ mm10
Exon Skipping
Gene
ENSMUSG00000035898 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:MGI Symbol;Acc:MGI:1913894]
Coordinates
chr5:86152826-86154434:-
Coord C1 exon
chr5:86154354-86154434
Coord A exon
chr5:86153316-86153366
Coord C2 exon
chr5:86152826-86152948
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTGTGGCCTTCTTTCTGTAGACT
3' ss Score
10.07
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TGTGTAGTATTGACTGAAATAAAACTGACATTACAAAAGAAGATCAACAATTTTTGCCATTCTCATTGCCCTCCAATTAAG
Seq A exon
ACTACTCCCAGCTTAACGTCCTCTTCTAATTTCCACTAACTAGTGCTTTTG
Seq C2 exon
TTCATTAGTGCAGATGTACATGGAATTTGGTCCAGGTTGTTTTGTGATTTTGGTGATGAATTTGAAGTTTCAGATACAACAGGAGAAGAACCAAAAGAAATTTTCATTTCAAACATAACGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035898_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(18.7=100)
A:
PF0089916=ThiF=PD(6.8=69.2)
C2:
PF0089916=ThiF=PD(10.8=36.6)
Main Inclusion Isoform:
ENSMUST00000039373fB4358
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCATTCTCATTGCCCTCC
R:
AAAATTTCTTTTGGTTCTTCTCCTGT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types