MmuEX0050084 @ mm9
Exon Skipping
Gene
ENSMUSG00000035898 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:MGI Symbol;Acc:MGI:1913894]
Coordinates
chr5:86581851-86583459:-
Coord C1 exon
chr5:86583379-86583459
Coord A exon
chr5:86582341-86582391
Coord C2 exon
chr5:86581851-86581973
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTGTGGCCTTCTTTCTGTAGACT
3' ss Score
10.07
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TGTGTAGTATTGACTGAAATAAAACTGACATTACAAAAGAAGATCAACAATTTTTGCCATTCTCATTGCCCTCCAATTAAG
Seq A exon
ACTACTCCCAGCTTAACGTCCTCTTCTAATTTCCACTAACTAGTGCTTTTG
Seq C2 exon
TTCATTAGTGCAGATGTACATGGAATTTGGTCCAGGTTGTTTTGTGATTTTGGTGATGAATTTGAAGTTTCAGATACAACAGGAGAAGAACCAAAAGAAATTTTCATTTCAAACATAACGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035898-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(18.7=100)
A:
PF0089916=ThiF=PD(6.8=69.2)
C2:
PF0089916=ThiF=PD(10.8=36.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCATTCTCATTGCCCTCC
R:
AAAATTTCTTTTGGTTCTTCTCCTGT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: