MmuEX0050338 @ mm9
Exon Skipping
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69783071-69786567:+
Coord C1 exon
chr2:69783071-69783204
Coord A exon
chr2:69785231-69785361
Coord C2 exon
chr2:69786481-69786567
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATAAATCTTACGCAGGATAGATT
3' ss Score
-2.48
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTATGAACTTGAACAAGCGAGAGCTCAATGAGCACGTGGAATTTGAGTCTCAGACCTACTATGCTGCCTTTGCTGCTGAGCTGGAAGCCTGTGCACAACCCATGTGGGGGCTTTTATCACATTGTAAAGTTAGG
Seq A exon
ATTGGGACAGAGTGAGACTGTTGGCAAGGTGACCAGATAAGTGATGTTTGGACTGGATGGTGGCAGCAAAGTAGGCGAGGACCTATATGATAATGTCATGGAAGAAGTGACAGGACGTGGAGAAGAGCAAG
Seq C2 exon
GAAACTCAAGAGTATACCAGGAATGTTGTAAGGTACTGCCTTGAAGCTCTTCAAGATTGGTTTGATGCTATTAACTTTGTAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308-'11-14,'11-13,13-14
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGAACTTGAACAAGCGAGAG
R:
CTCGTCTACAAAGTTAATAGCATCA
Band lengths:
221-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: