MmuEX0050338 @ mm10
Exon Skipping
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69945014-69948510:+
Coord C1 exon
chr2:69945014-69945147
Coord A exon
chr2:69947169-69947304
Coord C2 exon
chr2:69948424-69948510
Length
136 bp
Sequences
Splice sites
3' ss Seq
TAAAGATAAATCTTACGCAGGAT
3' ss Score
2.54
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTATGAACTTGAACAAGCGAGAGCTCAATGAGCACGTGGAATTTGAGTCTCAGACCTACTATGCTGCCTTTGCTGCTGAGCTGGAAGCCTGTGCACAACCCATGTGGGGGCTTTTATCACATTGTAAAGTTAGG
Seq A exon
GATAGATTGGGACAGAGTGAGACTGTTGGCAAGGTGACCAGATAAGTGATGTTTGGACTGGATGGTGGCAGCAAAGTAGGCGAGGACCTATATGATAATGTCATGGAAGAAGTGACAGGACGTGGAGAAGAGCAAG
Seq C2 exon
GAAACTCAAGAGTATACCAGGAATGTTGTAAGGTACTGCCTTGAAGCTCTTCAAGATTGGTTTGATGCTATTAACTTTGTAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000055758fB4387
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGAACTTGAACAAGCGAGAG
R:
CTCGTCTACAAAGTTAATAGCATCA
Band lengths:
221-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types