MmuEX0050713 @ mm10
Exon Skipping
Gene
ENSMUSG00000026839 | Upp2
Description
uridine phosphorylase 2 [Source:MGI Symbol;Acc:MGI:1923904]
Coordinates
chr2:58780002-58792971:+
Coord C1 exon
chr2:58780002-58780148
Coord A exon
chr2:58789098-58789111
Coord C2 exon
chr2:58791778-58792971
Length
14 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCCCAAATCTCTCAGTGA
3' ss Score
7.26
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GCCAAGGTCGCCTAGATGGGGCGTTATGCTCCTTTTCGAGAGAGAAAAAGCTAGACTACTTGAAGAGAGCATACAGAGCTGGTGTCAGGAACATTGAAATGGAATCGACTGTGTTCGCAGCCATGTGTGGCCTGTGTGGCCTGAGAG
Seq A exon
TGAAGTCTGAAACG
Seq C2 exon
TAGTTCCTATGTCAGCAAATAGTGTCCGGCTGAAAACCTGCAAACTACTCTGAGGAGTCTGTCTTCCTCATTCCATCCGTCAAAGAGCAGAGGAGTCAGATGAATAGACTCTTCTGCATCCCTCTTCAATCGGTTCCCCGTTTCTGTCTTCCTCATTATTCCAAGTCCAGATACCGTAACTTTCTGCCTTGTAGACATCTGCCAGGGTCTTGTTCTCTCGATAGCCACGCCTCTATTCTGGAAGTTCAACTGAGAGCTCTAGGCGGATGGCTCCTACTTCATCTCCTGCTCCTGCTTTAAATCTGAGCCCAGTGTTCCCTTCCTCCTGAGGCTCCAGTGGATCCCACACAGCCTTGCTTTCCTCCGTGCCCCCCCCCCCCCACTTCTTCAAAGAACTCATCACAACTTGAGGTTTGTTATGATTTGGGTCACTCTTTAATGGATGGCAAATGCCTTGGCAGTAAGATTCTGGAGGGCAAGGATTACATCTGCCATATTCACTGCTGTATTGTCTGCTTCTGGGTACCTAAAATAGTGCTATCAAATGCACGTTTGTCGAATGAGGAATGCATGTCTGCAGAGCACTTCCCTTACAAACTCTTCCTGTAATGAATGAGCAGGGTCTGGGTGTCGATTGATTTGCTCTAGGACGCTGTCTTGTGGTTCTCAGCACTGGGGCATATTAGGGTCTGTCAAAAACTTTCCCAAAACACTGCCTGAGGCCTCACTCGGACCAACACAGCAGGACTCGTTGAGAGTGGGCTGGTCTGTGGTAAAGCACAGCTGGGAAGACAGCAGTTGATTGAGAAGAACGTGTCCTGCGGGTGCCCCTCCAGCTGAACTGCTAAATGCCTTTGAACCATTCTCCACTAGAGGGGTTGTCAGAACAGCAACTCCTTGACGCCAGGAACAGTATCTGAATCTCTTTATATTCTAGCTGCTGACTGGTGCATAGTAAGGCTGGATGCATGAAGCATATATGTGTGTATTATTGCCTATACATATTAATAATCTAAGAATCTTATATAAGTCAAGAATACCTTAAAATATAACCCTTCCTATAAGGATATATGCCTGCACTTACAGCCTCTACGAAGACTGAAGCTCTAGAAACATGGTGTTCAACTAATTTTGCTAACAGGCATCACATGTTGGGTAGAAATGAAAACTTGAGTAAAAGATAAATGGACTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026839-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(19.5=100)
A:
PF0104815=PNP_UDP_1=PD(0.9=40.0)
C2:
PF0104815=PNP_UDP_1=PD(3.2=38.9)
Main Inclusion Isoform:
ENSMUST00000071543fB4430
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCTGGTGTCAGGAACA
R:
GCCGGACACTATTTGCTGACA
Band lengths:
105-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types