MmuEX1027408 @ mm10
Exon Skipping
Gene
ENSMUSG00000026839 | Upp2
Description
uridine phosphorylase 2 [Source:MGI Symbol;Acc:MGI:1923904]
Coordinates
chr2:58780002-58792971:+
Coord C1 exon
chr2:58780002-58780148
Coord A exon
chr2:58790029-58790260
Coord C2 exon
chr2:58791778-58792971
Length
232 bp
Sequences
Splice sites
3' ss Seq
CTTACGGCTTTCTTTACTAGCTG
3' ss Score
6.8
5' ss Seq
TATGTAATT
5' ss Score
-0.65
Exon sequences
Seq C1 exon
GCCAAGGTCGCCTAGATGGGGCGTTATGCTCCTTTTCGAGAGAGAAAAAGCTAGACTACTTGAAGAGAGCATACAGAGCTGGTGTCAGGAACATTGAAATGGAATCGACTGTGTTCGCAGCCATGTGTGGCCTGTGTGGCCTGAGAG
Seq A exon
CTGCTGTGGTCTGTGTGACACTTCTTGACAGACTCGAGAGTGACCAAATCAATTTGTCCCATGATGTCCTGGTGGAGTACCAGCAACGGCCACAGCTTCTAATCTCAAATTTCATCAAAAAACAGCTTGGACTTTGTGACCAGATGTCATAACTCCGAATCCCGCCACCCTCCTGAGAGTTGCTACACAGAGCTGCAACGATGGAGCCATGTGTTGTTCATAACATTCTTAT
Seq C2 exon
TAGTTCCTATGTCAGCAAATAGTGTCCGGCTGAAAACCTGCAAACTACTCTGAGGAGTCTGTCTTCCTCATTCCATCCGTCAAAGAGCAGAGGAGTCAGATGAATAGACTCTTCTGCATCCCTCTTCAATCGGTTCCCCGTTTCTGTCTTCCTCATTATTCCAAGTCCAGATACCGTAACTTTCTGCCTTGTAGACATCTGCCAGGGTCTTGTTCTCTCGATAGCCACGCCTCTATTCTGGAAGTTCAACTGAGAGCTCTAGGCGGATGGCTCCTACTTCATCTCCTGCTCCTGCTTTAAATCTGAGCCCAGTGTTCCCTTCCTCCTGAGGCTCCAGTGGATCCCACACAGCCTTGCTTTCCTCCGTGCCCCCCCCCCCCCACTTCTTCAAAGAACTCATCACAACTTGAGGTTTGTTATGATTTGGGTCACTCTTTAATGGATGGCAAATGCCTTGGCAGTAAGATTCTGGAGGGCAAGGATTACATCTGCCATATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026839_MULTIEX2-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(19.5=100)
A:
PF0104815=PNP_UDP_1=PD(15.5=76.5)
C2:
PF0104815=PNP_UDP_1=PD(3.2=38.9)
Main Inclusion Isoform:
ENSMUST00000071543fB19145
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATCGACTGTGTTCGCAG
R:
CTTCCAGAATAGAGGCGTGGC
Band lengths:
292-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types