MmuEX0051275 @ mm10
Exon Skipping
Gene
ENSMUSG00000034116 | Vav1
Description
vav 1 oncogene [Source:MGI Symbol;Acc:MGI:98923]
Coordinates
chr17:57311896-57315331:+
Coord C1 exon
chr17:57311896-57311934
Coord A exon
chr17:57314244-57314580
Coord C2 exon
chr17:57315244-57315331
Length
337 bp
Sequences
Splice sites
3' ss Seq
GGACACTGTCTTCTTTGCAGGCT
3' ss Score
7.53
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATTAAGTAACTCCTCCTTCCATGACCACGCCCCTTTGAC
Seq A exon
GCTCCTACTGGCTTCTTAACACACCCTTGAGGCAGGGGTTTTACGCATTGCAGCACTGTGTGATAAAGTCCCTAACAAAAACAACTTGGTGGAGAAAGAGGGTTTGTTCAGCTTGCTCTTGGAGAGACCTGTCCGCTCTAGTGGGGAAGGCACGGTGGCAGGAGCATGAGGCAGCTGGTCGAATCGCATCCACACTCAGGGAGCAGACTGTGTCTTAGGGTTTCTATTGCTGTGGAGAAAACACCATGGCCCAAAGCACCTTGGGGAGGGAAGAGTTTGTTTCAGCCTACACTTGGGCATATGCTCCATCACTGGGCTCAAGGCAGGAAACAAGGAG
Seq C2 exon
GTATAACGTGGAGGTCAAGCATATTAAAATCATGACGTCAGAGGGGTTGTACCGGATCACAGAGAAGAAGGCTTTCCGGGGCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034116-'27-46,'27-41,38-46=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001719=SH2=FE(38.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types