MmuEX0051275 @ mm9
Exon Skipping
Gene
ENSMUSG00000034116 | Vav1
Description
vav 1 oncogene [Source:MGI Symbol;Acc:MGI:98923]
Coordinates
chr17:57451207-57454754:+
Coord C1 exon
chr17:57451207-57451323
Coord A exon
chr17:57453667-57454003
Coord C2 exon
chr17:57454667-57454754
Length
337 bp
Sequences
Splice sites
3' ss Seq
GGACACTGTCTTCTTTGCAGGCT
3' ss Score
7.53
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTATGCGGGCCCTATGGAACGAGCAGGCGCTGAGGGCATCCTCACCAACCGTTCTGATGGGACCTATCTGGTGCGGCAGAGGGTGAAAGATACAGCGGAGTTCGCCATCAGCATTAA
Seq A exon
GCTCCTACTGGCTTCTTAACACACCCTTGAGGCAGGGGTTTTACGCATTGCAGCACTGTGTGATAAAGTCCCTAACAAAAACAACTTGGTGGAGAAAGAGGGTTTGTTCAGCTTGCTCTTGGAGAGACCTGTCCGCTCTAGTGGGGAAGGCACGGTGGCAGGAGCATGAGGCAGCTGGTCGAATCGCATCCACACTCAGGGAGCAGACTGTGTCTTAGGGTTTCTATTGCTGTGGAGAAAACACCATGGCCCAAAGCACCTTGGGGAGGGAAGAGTTTGTTTCAGCCTACACTTGGGCATATGCTCCATCACTGGGCTCAAGGCAGGAAACAAGGAG
Seq C2 exon
GTATAACGTGGAGGTCAAGCATATTAAAATCATGACGTCAGAGGGGTTGTACCGGATCACAGAGAAGAAGGCTTTCCGGGGCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034116_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(52.0=97.5)
A:
PF0001719=SH2=PD(2.4=14.3)
C2:
PF0001719=SH2=FE(38.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGCGGGCCCTATGGAAC
R:
CCCCGGAAAGCCTTCTTCTCT
Band lengths:
198-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: