MmuEX0052616 @ mm10
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137391638-137393227:-
Coord C1 exon
chr5:137393010-137393227
Coord A exon
chr5:137391951-137392092
Coord C2 exon
chr5:137391638-137391855
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTGTGGTTTCTGCAGACC
3' ss Score
10.59
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
Exon sequences
Seq C1 exon
CTCTGAAATGCCCGGCCCACAGCCTCTATACCAACTGCCTTCCCTCCTGTCTCCCTTCCTGCTCGGACCCAGAGGGCCTCTGTGGGGGCACCAGCCCTGAAGTTCCCTCCACCTGCAAGGAGGGCTGCTTCTGTCAATCTGGCTATGTGCTGCATAAAAATAAATGTATGCTTAGAATTCACTGTGACTGCAAAGACTTCCAGGGTAGCCTCATTAAG
Seq A exon
ACCGGCCAGACATGGATCTCCTCTGGGTGTTCCAAGATCTGTACATGCAAGGGAGGGTTCTTTCAGTGCCAGAGTTACAAATGCCCCTCGGGGACCCAGTGCGAGGAAAGCGAAGATGGCAGCAGTAACTGTGTCTCCAGCA
Seq C2 exon
CTATGAAGTGCCCAGCCAACAGTCTCTACACCCACTGCCTTCCCACCTGTCTACCTTCCTGCTCTAACCCTGATGGCCGCTGTGAGGGCACCAGCCACAAGGCCCCCTCCACCTGCAGGGAGGGCTGTGTCTGTCAACCTGGCTACCTGCTCAATAAGGACACGTGTGTGCACAAAAACCAGTGTGGCTGTAAAGATATCAGGGGCAACATCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=WD(100=80.8),PF127142=TILa=PU(17.9=13.7)
A:
PF127142=TILa=PD(78.6=91.7)
C2:
PF0182612=TIL=WD(100=80.8),PF127142=TILa=PU(17.9=13.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGCTGCTTCTGTCAATC
R:
AGGTAGCCAGGTTGACAGACA
Band lengths:
248-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types