RnoEX6063840 @ rn6
Exon Skipping
Gene
ENSRNOG00000056032 | AABR07035780.1
Description
NA
Coordinates
chr12:22373883-22375484:+
Coord C1 exon
chr12:22373883-22374157
Coord A exon
chr12:22375032-22375173
Coord C2 exon
chr12:22375267-22375484
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTGTGGCTTCTGCAGGTC
3' ss Score
11.02
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
Exon sequences
Seq C1 exon
CTTGGTTTTCTGCTTTTTGGGCTCCACATTCTTTGCTAATCTCCTTCCGCCCCACAGCTCTGAAGTGCCCAGCCCACAGCCTCTACACCCACTGCCTTCCCTCCTGCCTGCCTTCCTGCTCGGACCCAGAGGGCCTCTGTGGGGGCACCAGCCCTGAAGTCCCCTCCACCTGCAAGGAGGGCTGCTTCTGTCGATCCGGCTACGTGCTGCATAACAACAAGTGTATGCTTAGAATTCACTGTAACTGCAAAGACAGCCAGGGTAGCCTCATCCAG
Seq A exon
GTCGGCCAGACACGGATCTCCTCTGGGTGTTCCCAGATTTGTGAATGCAAGAAAGGATCCTTTCAGTGCCAAAGTTTTAAGTGCCCCTCAGGGACCCAGTGTGAGGAGAACGAAGACGGCAGCCATAACTGTGTCTCCAGCA
Seq C2 exon
CTATGAAGTGCCCCGCCAACAGCCTCCGCACCAACTGCCTCCCTTCCTGTCTACGTTCCTGCTCCAACCCTGATGGCCACTGTGAGGGCACCAGCCACAAAACCCCCTCCACCTGCAGGGAGGGCTGTGTCTGTCGACCTGGCTACCTGCTCGATAAGGACACGTGTGTGCGCAAAGACCAGTGTGACTGCAAAGATATCAAGGGCGACATCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056032-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTACGTGCTGCATAACAA
R:
CACGTGTCCTTATCGAGCAGG
Band lengths:
245-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]