MmuEX0053001 @ mm10
Exon Skipping
Gene
ENSMUSG00000030016 | Zfp638
Description
zinc finger protein 638 [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83978022-83979773:+
Coord C1 exon
chr6:83978022-83978087
Coord A exon
chr6:83978994-83979299
Coord C2 exon
chr6:83979673-83979773
Length
306 bp
Sequences
Splice sites
3' ss Seq
GATTCTTAACTCTCCAACAGGAA
3' ss Score
8.12
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
GCATTGGCTTTGCAGAACACTAAGAATTCTAAAAGTACTACAGATAGAAGTTCCAAATCGAAAGAG
Seq A exon
GAACCATTATTTACATTTAATTTGGATGAATTTGTTACTGTGGATGAAGTCATAGAAGAAGTAAATCCTTCTCAAGCCAAGCAGAATCCATTAAAAGGAAAAAGAAAGGAAGCCCTCAAAATTTCTCCTTCCCCTGAACTTAACTTAAAAAAGAAAAAGGGGAAAACTTCTGTCCCTCACAGTGTTGAGGGAGAATTGTCCTTTGTAACATTAGATGAAATAGGGGAGGAAGAAGATGCAACTGTGCAAGCTCTAGTCACTGTGGATGAAGTCATTGATGAAGAAGAGCTCAATATGGAAGAAATG
Seq C2 exon
AAGAGCTGAATTTTGTTACTGTGGATGAAGTTGGAGATGAGGAAGATGGAGACAATGATTCAAAAGTTGAGTTAGCACGAGGCAAAATTGAGCACCATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-'54-59,'54-57,55-59
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.752 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENSMUST00000203891fB19963
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types