MmuEX0053001 @ mm9
Exon Skipping
Gene
ENSMUSG00000030016 | Zfml
Description
zinc finger, matrin-like [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83928016-83934068:+
Coord C1 exon
chr6:83928016-83928081
Coord A exon
chr6:83928988-83929903
Coord C2 exon
chr6:83933970-83934068
Length
916 bp
Sequences
Splice sites
3' ss Seq
GATTCTTAACTCTCCAACAGGAA
3' ss Score
8.12
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GCATTGGCTTTGCAGAACACTAAGAATTCTAAAAGTACTACAGATAGAAGTTCCAAATCGAAAGAG
Seq A exon
GAACCATTATTTACATTTAATTTGGATGAATTTGTTACTGTGGATGAAGTCATAGAAGAAGTAAATCCTTCTCAAGCCAAGCAGAATCCATTAAAAGGAAAAAGAAAGGAAGCCCTCAAAATTTCTCCTTCCCCTGAACTTAACTTAAAAAAGAAAAAGGGGAAAACTTCTGTCCCTCACAGTGTTGAGGGAGAATTGTCCTTTGTAACATTAGATGAAATAGGGGAGGAAGAAGATGCAACTGTGCAAGCTCTAGTCACTGTGGATGAAGTCATTGATGAAGAAGAGCTCAATATGGAAGAAATGGTAAAAAATTCCAACTCCCTTCTTACCTTAGATGAACTAATTGACCAAGATGATTGCATTCCCCACAGTGGACCTAAAGATGTTACTGTCCTGTCGATGGCTGAAGAACAAGATCTACAACAGGAACGCTTGGTAACTGTGGATGAAATTGGAGAAGTAGAAGAGTCAGCAGACATAACTTTTGCTACTTTGAATGCTAAAAGAGATAAAAGGGATTCTATTGGGTTCATTTCTTCCCAGATGCCTGAAGACCCTTCCACTTTAGTTACTGTAGATGAAATACAGGATGACAGCAGTGATTTTCACTTAATGACTTTGGATGAAGTAACTGAAGAGGATGAAAACTCTCTGGCTGATTTTAACAACCTTAAAGAAGAGCTGAATTTTGTTACTGTGGATGAAGTTGGAGATGAGGAAGATGGAGACAATGATTCAAAAGTTGAGTTAGCACGAGGCAAAATTGAGCACCATACAGATAAAAAAGGAAATAGAAAGAGGAGAGCTGTGGACCCAAAGAAGTCAAAGCTTGATTCTTTCTCCCAAGTAGGTCCAGGAAGTGAAACTGTTACACAAAAAGATCTGAAAACCATGCCTGAAAGACATTTGGCAG
Seq C2 exon
TTGATGACGCTGAACTAAAGGATTCAGAACCTGATGAAAAACGCAGGAAGACTCAAGACTCTTCTGTAGGCAAATCAATGACATCTGATGTCCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-'28-39,'28-31,29-39
Average complexity
C1
Mappability confidence:
92%=100=88%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.755 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: