MmuEX0053002 @ mm9
Exon Skipping
Gene
ENSMUSG00000030016 | Zfml
Description
zinc finger, matrin-like [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83928988-83934068:+
Coord C1 exon
chr6:83928988-83929903
Coord A exon
chr6:83931678-83931779
Coord C2 exon
chr6:83933970-83934068
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTAGGCTTTCTTTTTAAAGCTA
3' ss Score
6.17
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
AGATCTACAACAGGAACGCTTGGTAACTGTGGATGAAATTGGAGAAGTAGAAGAGTCAGCAGACATAACTTTTGCTACTTTGAATGCTAAAAGAGATAAAAGGGATTCTATTGGGTTCATTTCTTCCCAGATGCCTGAAGACCCTTCCACTTTAGTTACTGTAGATGAAATACAGGATGACAGCAGTGATTTTCACTTAATGACTTTGGATGAAGTAACTGAAGAGGATGAAAACTCTCTGGCTGATTTTAACAACCTTAAAGAAGAGCTGAATTTTGTTACTGTGGATGAAGTTGGAGATGAGGAAGATGGAGACAATGATTCAAAAGTTGAGTTAGCACGAGGCAAAATTGAGCACCATACAGATAAAAAAGGAAATAGAAAGAGGAGAGCTGTGGACCCAAAGAAGTCAAAGCTTGATTCTTTCTCCCAAGTAGGTCCAGGAAGTGAAACTGTTACACAAAAAGATCTGAAAACCATGCCTGAAAGACATTTGGCAG
Seq A exon
CTAAAACGCCAATGAAGAGAGTTAGAATTGGGAAATCATCACCCTCACAAAAAGTGGCAGAACCAACAAAAGGCGAAGAGGCCTTCCAAATGAGTGAAGGAG
Seq C2 exon
TTGATGACGCTGAACTAAAGGATTCAGAACCTGATGAAAAACGCAGGAAGACTCAAGACTCTTCTGTAGGCAAATCAATGACATCTGATGTCCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-'29-39,'29-36,30-39
Average complexity
C1*
Mappability confidence:
89%=100=80%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.755 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGCAAAATTGAGCACCA
R:
ACATCAGATGTCATTGATTTGCCT
Band lengths:
252-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: