RnoEX0101600 @ rn6
Exon Skipping
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115677573-115682611:+
Coord C1 exon
chr4:115677573-115678488
Coord A exon
chr4:115680060-115680161
Coord C2 exon
chr4:115682513-115682611
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTAGGCTTTCTTTTTAAAGCTA
3' ss Score
6.17
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
AGATCTTCAACAGGAACGCTTGGTAACTGTTGATGAAATTGGAGAAGTAGAAGAGTCAGCAGACATAACCTTTGCTACTTTGAATGCTAAAAGAGATAAAAGGGATTCTATTGGGTTCATTTCTTCCCAGATGCCTGAAGACCCTTCTACTTTAGTTACTGTAGATGAAATACAGGATGATAGCAGTGATTTTCATTTAATGACTTTGGATGAAGTAACTGAAGAAGATGAAGACTCTCTGGCTGATTTTAACAACCTTAAAGAAGAACTGAATTTTGTTACTGTGGATGAAGTTGGAGATGAAGAGGATGGAGACAATGATTCAAAAGTTGAGTTAGCACAAGGCAAAATTGACCACCGTACAGATAAAAAAGGAACTAGAAAGAGGAGAGCTGTGGACCCAAAGAAGACAAAACTTGATCCTTTCTCCCAAGTAGGTCCAGGAAGTGAGACTGTTACACAGAAAGATCTGAAAACCATGACTGAAAGACATTTGGCAG
Seq A exon
CTAAAACGCCATTGAAGAGAGTTAGACTTGGGAAAGCATCACTCTCACAAAAAGTGGCAGAACCAGCAAAAGGCGAAGAGGCCTTCCAAATGAGTGAAGGAG
Seq C2 exon
TTGATGAAGCTGAACTAAAGGATTTAGAACCTGATGAAAAACGTAGGAAGATTGAAGACTCTTCTATAGGCAAATCAGTGACATCTGATGTCTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501_MULTIEX2-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=0.743 C2=0.765
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000019617fB16983
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCAAAATTGACCACCGT
R:
TCAGATGTCACTGATTTGCCT
Band lengths:
248-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]