RnoEX0101599 @ rn6
Exon Skipping
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115670902-115682611:+
Coord C1 exon
chr4:115670902-115670939
Coord A exon
chr4:115674838-115674977
Coord C2 exon
chr4:115682513-115682611
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTAAATACTTTTAGCCC
3' ss Score
6
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTTCAAAAGAAGAATGATCCAGAACTTGGAAAAGAAAG
Seq A exon
CCCTGACTTGAAAAACAGTCCTGTTGATGAAAGTGAGGTACAAACAGCAGCTGATAGTCCCTCTGTTAAACCTAGTGAGGTTGAAGAAGAAACCACTTCCAATATTGGAACAGAACCTTCAGTGCATCAGGAAGAACTTG
Seq C2 exon
TTGATGAAGCTGAACTAAAGGATTTAGAACCTGATGAAAAACGTAGGAAGATTGAAGACTCTTCTATAGGCAAATCAGTGACATCTGATGTCTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501_MULTIEX2-1/5=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.682 C2=0.765
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAAGAAGAATGATCCAGAACTTG
R:
TCAGATGTCACTGATTTGCCT
Band lengths:
124-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]