MmuEX0052999 @ mm10
Exon Skipping
Gene
ENSMUSG00000030016 | Zfp638
Description
zinc finger protein 638 [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83972246-83984074:+
Coord C1 exon
chr6:83972246-83972283
Coord A exon
chr6:83976202-83976350
Coord C2 exon
chr6:83983976-83984074
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGTTTGTTTTTAAGTAC
3' ss Score
7.5
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTTCAAAGGAAGAATGATCTGGAACTAGGAAAAGGAAG
Seq A exon
TACTTTTAGCCCTGACTTGAAAAACAGTCCTGTTGATGAAAGTGAGGTACAAACAGCAGCTGATAGTTCCTCTGTTAAACCTAGTGAGGTTGAAGAAGAAACTACTTCCAATATTGGAACAGAAACTTCAGTGCATCAGGAAGAACTTG
Seq C2 exon
TTGATGACGCTGAACTAAAGGATTCAGAACCTGATGAAAAACGCAGGAAGACTCAAGACTCTTCTGTAGGCAAATCAATGACATCTGATGTCCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016_MULTIEX2-1/7=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.754 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGAATGATCTGGAACTAGGA
R:
ACATCAGATGTCATTGATTTGCCT
Band lengths:
123-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types