MmuEX1028581 @ mm10
Exon Skipping
Gene
ENSMUSG00000030016 | Zfp638
Description
zinc finger protein 638 [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83976202-83984074:+
Coord C1 exon
chr6:83976202-83976350
Coord A exon
chr6:83976518-83977429
Coord C2 exon
chr6:83983976-83984074
Length
912 bp
Sequences
Splice sites
3' ss Seq
ATGAGTCTGCTTTAAACCAGCAG
3' ss Score
2.06
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TACTTTTAGCCCTGACTTGAAAAACAGTCCTGTTGATGAAAGTGAGGTACAAACAGCAGCTGATAGTTCCTCTGTTAAACCTAGTGAGGTTGAAGAAGAAACTACTTCCAATATTGGAACAGAAACTTCAGTGCATCAGGAAGAACTTG
Seq A exon
CAGATGTACACCAGTGACTTTGAAAAGGAAGAGGCAGAAGTTACAAACCCTGAAACTGAATTAGCAGTATCTGACAGTGTCTTCATAGAAGAAAGGAACATCAAGGGAATTATAGAAGATTCTCCATCTGAAACAGAAGATATATTTTCTGGAATTGTACAGCCTATGGTAGATGCCATAGCTGAAGTGGATAAACATGAAACTGTTTCAGAAGTACTGCCATCTGCTTGTAATGTGACCCAAGCACCAGGAAGTTACATTGAAGATGAGAAGGTTGTGAGCAAAAAGGATATTGCTGAAAAAGTTATCTTGGATGAAAAGGAGGAAGATGAATTTAATGTTAAGGAGACCAGAATGGATTTACAAGTAAAAACAGAGAAGGCTGAGAAGAATGAAGCTATCATATTTAAAGAAAAATTGGAGAAGATTATAGCAGCAATAAGAGAAAAGCCAATTGAAAGTTCTGTAATCAAGGCAGACCCAACTAAAGGAGTGGATCAGACCAGTAAGCCTGATGAAACTGGTAAAAGTAGTGTGCTGACTGTATCAAATGTATATAGTAGTAAATCAAGCATCAAGGCTACTGTGGTCTCTTCTCCTAAAGCAAAAAGTACACCTTCAAAAACTGAAAGTCACAGCACCTTCCCAAAACCTGTGCTTAGAGAGCAAATAAAGGCTGAAAAGAAAGTTTCAGCCAAGGAATTTGGTCTGCTTAAAAATACCAGATCAGGCTTGGCAGAAAGCAACAGTAAATCCAAACCCACTCAGATTGGTGTTAACAGAGGGTGCAGTGGAAGGATCTCAGCCCTTCAGTGCAAGGATTCTAAAGTGGATTACAAGGACATAACAAAACAGTCTCAGGAAACAGAGACTAAACCTCCCATCATGAAACGGGATGACAGCAACAATAAG
Seq C2 exon
TTGATGACGCTGAACTAAAGGATTCAGAACCTGATGAAAAACGCAGGAAGACTCAAGACTCTTCTGTAGGCAAATCAATGACATCTGATGTCCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016_MULTIEX2-2/7=1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=0.586 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000203891fB19962
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTAGCCCTGACTTGAAAAACA
R:
ACATCAGATGTCATTGATTTGCCT
Band lengths:
239-1151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types