BtaEX6043237 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009242 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr11:13165239-13172483:-
Coord C1 exon
chr11:13172446-13172483
Coord A exon
chr11:13165906-13167124
Coord C2 exon
chr11:13165239-13165304
Length
1219 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTAAATACTTATAGCCC
3' ss Score
5.83
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGAAAGCTGAGAAAGACCCAGAACTAGGAAAGGAAAG
Seq A exon
CCCTGACTTGAAAAACAGTCCAGTTGATGAAAGTGAGGTGCAAACAACAGCTGATAGTCCCTCTATTAAACCTAGTGAGGTTGAAGAAGAATCTGTTCCCAGCGTTCAAACAGGAACTTTTATACAGCAGAAAGAGCCTTTTGAGGAAGAACCAGAAAAAACACTGTGTGTCTCTGATTTTGCTCTTGAAACAGTTGAAGTTGAAACTCAAGGAGAGGAGGTCAAAGTGGAAATTCCTCTTGTAGCATCCACGTCAGCCAGTATTGACTTATTCACTGAAAATGTAGGGGAATCTGTTTTAAATCAGCAGGTGTATACCGGTGACTTTGAGAAGGAAGAGACAGAAATTATTAACCCGGAAACAGAGTTATCAACCTCTGATAATACATTTATAGAAGAAAGGAACATCAAAGGAATTCTAGAAGACTCTCCATCTGAAGCAGATTTCTTTTCTGGGATTACAGAGTCTATGATAGAAGCTGTAGCTGAAGTAGACAAACAAGAAACTGTTTCAGAAATAGTACCATCTACTTGTGTTGTGGCCTTAGTACCTGGAATTTCCACTGGGGATGAGCAGGCAGTGAGCACAAAGGGAATTTCTGAAAAAACTAACATGGATGAGAAGGAGGAGAATGAATTAAATACTAAGGAAGCCAGAATGGATCTGAAAACAGGAAGAGAGAAAGCTGAGAAGAATGATAGGATGGTTACAGAGAAGCTGGATAAGGTTGTAGCTGCAGTGAAAGAAAAGCCTGCAGAAAACTCAGTGACCAAGGCATGTCCAAATAAAACAGTGGTTCAGGCCAATAAGCCTGATGAAACGAGTAAAATCAGTATGCTGGTTGCATCAAATGCATCTAGCAGTAAATCAGGCATCAAGGCTGATGTGGTCTCTTCTACAAAGGCAAGAGCTACAGCTTCAAAATCTGAAAACCAGAAAAGTTTTCTAAAATCTGTACTCAGAGATCAAATAAATGCTGAAAAGAGGCTTTCAGCCAAGGAATCGGGTCTACTTAAACCTACAAGTGCCAGGTCAGGCGTGGCTGAAAACAGCAGTAAATTAAAACCCATTCAGAGCGGTGTTACCAGAGGAAGCAGTGGAAGGATCTCAGCCCTGCAAGGCAAAGATTCTAAACTGGATTACAGGGATGTTACAAAACAGCCTCAGGAAACAGAGGCTAAACCTTCCATCATGAAACGGGATGACAGCAACAATAAG
Seq C2 exon
ACTTTGACAGGGCAAAACACTAAGAATCCTAAAAATACCACTGGTAGAAGTTCAAAATCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009242-'25-29,'25-28,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.796 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]