HsaEX0074101 @ hg38
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71418602-71431428:+
Coord C1 exon
chr2:71418602-71418639
Coord A exon
chr2:71422814-71424038
Coord C2 exon
chr2:71431327-71431428
Length
1225 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTAAATACTTTTAGCCC
3' ss Score
6
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGCAAATTGAGCATGACCCAGAATTAGAAAAAGAAAG
Seq A exon
CCCTGGCTTGAAAAACAGTCCAATTGATGAAAGTGAGGTGCAAACAGCAACTGATAGTCCCTCTGTTAAACCTAATGAGCTTGAAGAAGAAAGTACTCCCAGCATTCAAACAGAAACTTTGGTACAGCAGGAAGAGCCTTGTGAGGAAGAAGCTGAAAAAGCAACATGTGATTCTGACTTTGCTGTTGAAACTTTGGAGCTTGAAACTCAAGGAGAGGAGGTCAAAGAAGAAATTCCTCTTGTAGCATCCGCTTCAGTCAGTATTGAACAATTCACTGAAAATGCCGAGGAGTGTGCTTTAAATCAGCAGATGTTTAACAGTGACTTGGAGAAGAAAGGGGCAGAAATTATTAACCCTAAAACAGCATTGTTACCATCTGACAGTGTGTTTGCAGAAGAAAGGAACCTCAAAGGAATTCTAGAAGAATCTCCATCTGAAGCAGAAGATTTCATTTCTGGAATTACACAGACTATGGTAGAAGCTGTAGCTGAAGTAGAAAAAAATGAAACTGTTTCGGAAATATTGCCATCAACTTGTATTGTGACGTTAGTACCAGGAATTCCCACTGGGGATGAGAAGACAGTGGACAAAAAGAATATTTCTGAAAAAAAAGGTAACATGGATGAAAAGGAGGAGAAGGAATTTAATACTAAGGAAACCAGAATGGATCTTCAAATAGGAACAGAGAAGGCTGAAAAGAATGAAGGTAGGATGGATGCAGAAAAGGTGGAAAAGATGGCAGCAATGAAAGAAAAGCCTGCAGAAAACACTTTATTCAAGGCATACCCAAATAAAGGAGTGGGTCAGGCTAATAAGCCTGATGAAACTAGTAAAACTAGTATTCTGGCTGTATCAGATGTATCTAGCAGTAAACCAAGCATCAAGGCTGTTATAGTCTCTTCTCCTAAGGCAAAAGCTACAGTTTCAAAAACTGAAAATCAGAAAAGTTTTCCAAAATCTGTGCCCAGAGATCAAATAAATGCTGAAAAGAAACTTTCAGCCAAGGAATTTGGTCTGCTTAAACCCACAAGTGCCAGGTCAGGCTTGGCAGAAAGCAGCAGTAAATTCAAACCTACTCAGAGCAGTCTTACCAGAGGAGGCAGTGGAAGGATCTCAGCCCTGCAAGGCAAGCTTTCTAAACTGGATTACAGAGATATAACAAAACAATCTCAGGAAACAGAGGCTAGACCTTCCATCATGAAACGGGATGACAGCAACAATAAG
Seq C2 exon
TTGATGAGGAATCTGGATTAAAGGATTCAGAACCAGAGCGAAAACGCAAGAAGACTGAAGACTCTTCTTCAGGCAAATCAGTGGCGTCTGATGTCCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292_MULTIEX2-1/7=C1-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.829 C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development