RnoEX0101593 @ rn6
Exon Skipping
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115676639-115682611:+
Coord C1 exon
chr4:115676639-115676704
Coord A exon
chr4:115677573-115678488
Coord C2 exon
chr4:115682513-115682611
Length
916 bp
Sequences
Splice sites
3' ss Seq
GATTCTTAACTCTCTAACAGGAA
3' ss Score
8.2
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GCATTGGCTTTGCAGAACACTAAGAATTCTAAAAGTACTACTGATAGAAGTTCCAAATCGAAAGAG
Seq A exon
GAACCATTATTTACATTTAATTTGGATGAATTTGTTACTGTGGATGAAGTCATAGAAGAAGTAAATCCTTCTCAAGCCAAGCAGAATCCATTAAAAGGAAAAAGAAAGGAAGCCCTCAAAATTTCTCCATCCCCTGAACTTAACTTAAAAAAGAAAAAGGGGAAAACTTCTGTTCCTCACAGTGTTGAGGGAGAATTGTCCTTTGTAACATTAGATGAAATAGGGGAGGAAGAAGATTCAACTGCGCAAGCTCTAGTCACTGTGGATGAAGTCATTGATGAAGAAGAGCTCAATATGGAAGAAATGGTAAAAAATTCTAACTCCCTTCTTACCTTAGATGAACTAATTGACCAAGATGATTGCATTCCCCACAGTGGACCTAAAGATGTTACTGTCCTGTCCATGGCTGAAGAGCGAGATCTTCAACAGGAACGCTTGGTAACTGTTGATGAAATTGGAGAAGTAGAAGAGTCAGCAGACATAACCTTTGCTACTTTGAATGCTAAAAGAGATAAAAGGGATTCTATTGGGTTCATTTCTTCCCAGATGCCTGAAGACCCTTCTACTTTAGTTACTGTAGATGAAATACAGGATGATAGCAGTGATTTTCATTTAATGACTTTGGATGAAGTAACTGAAGAAGATGAAGACTCTCTGGCTGATTTTAACAACCTTAAAGAAGAACTGAATTTTGTTACTGTGGATGAAGTTGGAGATGAAGAGGATGGAGACAATGATTCAAAAGTTGAGTTAGCACAAGGCAAAATTGACCACCGTACAGATAAAAAAGGAACTAGAAAGAGGAGAGCTGTGGACCCAAAGAAGACAAAACTTGATCCTTTCTCCCAAGTAGGTCCAGGAAGTGAGACTGTTACACAGAAAGATCTGAAAACCATGACTGAAAGACATTTGGCAG
Seq C2 exon
TTGATGAAGCTGAACTAAAGGATTTAGAACCTGATGAAAAACGTAGGAAGATTGAAGACTCTTCTATAGGCAAATCAGTGACATCTGATGTCTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501-'34-42,'34-35,36-42
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.781 C2=0.765
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]