MmuEX0053022 @ mm10
Exon Skipping
Gene
ENSMUSG00000051034 | Zfp11
Description
zinc finger protein 11 [Source:MGI Symbol;Acc:MGI:99156]
Coordinates
chr5:129654593-129670099:-
Coord C1 exon
chr5:129670060-129670099
Coord A exon
chr5:129660770-129660865
Coord C2 exon
chr5:129654593-129658385
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTTGTAATAAACAGGTC
3' ss Score
8.71
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGGACACCGCGGAAAAGATCCGTTCCGGAATCGGGACAAG
Seq A exon
GTCTTGCTGTGTGTAAGCCCTACCTGGTCACGCTGCTGGAGCAGAAACAAGAGCTTTGGGATGTGAAGGGACAGGAGTCAGGAATCATGTCCCCAG
Seq C2 exon
AGAATCTTTCTGACTGTAACAACTCTGTAAAAGACTTTGATCAACACCCAGAACTTACCATCCGGCAATGTGTGCACAGAGAGAAGCCGTACAAGCAGGAAGAATGTGATGACTCAGCTTGCGATCAGCATCTCAGGGTGCATAAAGGAGGCATGCCCTATGAATGCAAAGACTGTGGGAAAGCCTTTAAATACCGCTCGGTCCTCTACCAACACCGCATCATTCACACGGCCGCAAGACCCTACAAATGTAAAGAGTGCGGCAAAGCTTTCAAGAGAAGTAGAAACCTCGCTCAGCACCAGGTGACACACAAGAGGGAGAAACCACACAAGTGTGAAGAGTGCGGCAGAGCCTTTTCTGCACTTTCTGTCCTTACTCAACACCGCATCACCCACACCGGAGAGAAGCCCTTCAAGTGTAAAGAGTGCGGCAGAGCCTTTAAATATAACTCGACCCTTACTCAGCATGAAGTCATTCATACTGAAGCCAAACCCTACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051034-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.500 C2=0.036
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACCGCGGAAAAGATCC
R:
GCTGATCGCAAGCTGAGTCAT
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types