RnoEX0002516 @ rn6

Exon Skipping

Gene

ENSRNOG00000051442 | AABR07036019.1

Description

zinc finger protein 11 [Source:NCBI gene;Acc:100363065]

Coordinates

chr12:30655898-30668370:+

Coord C1 exon

chr12:30655898-30655925

Coord A exon

chr12:30662616-30662711

Coord C2 exon

chr12:30665522-30668370

Length

96 bp

Sequences

Splice sites

3' ss Seq

TCTCTGTTTGCAATAAACAGGTC

3' ss Score

7.19

5' ss Seq

CAGGTAGGT

5' ss Score

10.28

Exon sequences

Seq C1 exon

AAACGATCCGTTCCGGAATCCGGACATG

Seq A exon

GTCTTGCTGTGTGTAAGCCTTCCCTGGTCACACTGCTGGAACAGATACAAGAGCCTTGGGATGTGAAGGGACAGGAGTCAGGAACCATGTACCCAG

Seq C2 exon

AGAATCTTTCTGACTGTAACAACTCAGCAAAAGACTTTGATCAACATGCAAAACTTACCATCCATCAGTGTGCGCACCGCAAAGAGACGTCAGACAAGCAGGAAGACGGTGACGAATCAGCTTCTGATCAGCATCTCAGGGTGCGTACAGGAGACATGGTCTACAAGTGTAAAGACTGTGGGAAAGCCTTCAAATACCGCTCAGTCCTCTACCAGCACCACATAAGTCACACGGCTGCAAGGCCCTACAAATGTAAAGAGTGCGGCAAAGCCTTCAAGAGAAGCAGAAACCTTGCTCAGCACCAGGTGACTCATAAGAGAGAGAAGCCACACAAGTGCGAAGAGTGCGGCCGAGCCTTTACCACACTTTCTGTCCTTACGCAGCACCGAGTCACCCACACCGGAGAGAAGCCCTACCAGTGTAAAGAATGCGGCAGAGCCTTTAAATATAACTCAACCCTCACTCAGCACGAAGTCATTCATACTGAAGCCAAACCGTAC

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000051442_MULTIEX1-2/2=C1-C2

Average complexity

C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available

Features

Disorder rate (Iupred):

C1=NA A=0.000 C2=0.074

Domain overlap (PFAM):

C1:

NA

A:

NO

C2:

PF0009621=zf-C2H2=WD(100=4.1),PF0009621=zf-C2H2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.5)

Main Inclusion Isoform:

ENSRNOP00000073606