MmuEX0053031 @ mm10
Exon Skipping
Gene
ENSMUSG00000068134 | Zfp120
Description
zinc finger protein 120 [Source:MGI Symbol;Acc:MGI:1345179]
Coordinates
chr2:150114406-150119951:-
Coord C1 exon
chr2:150119825-150119951
Coord A exon
chr2:150119565-150119628
Coord C2 exon
chr2:150114406-150118200
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCTTTGGTACTATATTTCAGGCT
3' ss Score
6.82
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GATATAGTGACCTATGATGATGTGCATGTGAACTTCACGTGGGAAGAGTGGGCTTTGCTGGATCCTTCTCAGAAGGATCTCTACAGAGATGTGATGCTGGAGACCTACAGGAATCTCGCTGCTATAG
Seq A exon
GCTACTATTGGAAAGGCCATAATATTTCTGAAGGACATTTTCAAAATTCTAGAAGAAACGGAAG
Seq C2 exon
GCATGAAAGAAGTGATACTGAAGAGAAACTTTCTGAATTTACTCAATATGATAAAGACTTTGCATATCAGAGCCATCCTCAAAGGCATGAAAGAATTTATTCTGGAGAGAAACCCTATGAAGGTGTCCAATATTTTGAAGACTTTGCACATCACAGTAGTCTCCAAATACAGAGAAGAACACATGTTGTAGAAAAACCCTATGAGTGTAACCAATGTGGCAAAGCCTTTGCATACCACAGTTATCTTCAAAGGCATGAAAGAAGTCATACAGGAGAGAAACCTTATGAATGTAATCAATGCGGTAAAGCCTTTGGACGGCACAGTCATCTTCAGAGACATGAAAGAATTCATACAGGAGAAAAAAGCTATGACTGTAATCAATGTGGTAAAACATTTGTACATCACAGTCATCTTCAAATACATAAAAGAACACATATTGGAGAGAAACCCTTTGAATGTAACCAATGTGGTAAAGCCTTTGCACGAAACAGTCATCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068134_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.386 C2=0.070
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4)
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGTGATGCTGGAGACCT
R:
CATGCCTTTGAGGATGGCTCT
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types