RnoEX6019588 @ rn6
Exon Skipping
Gene
ENSRNOG00000006112 | LOC102554315
Description
zinc finger protein 596-like [Source:RGD Symbol;Acc:7747897]
Coordinates
chr3:145639155-145641654:-
Coord C1 exon
chr3:145641528-145641654
Coord A exon
chr3:145641274-145641334
Coord C2 exon
chr3:145639155-145640199
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCTCTGGTACTATATTTCAGGCT
3' ss Score
7.07
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GATGTAGTGAACTATGATGATGTGCATGTGAACTTCACGTGGGAAGAGTGGGCTTTGCTGGATCCCTCTCAGAAGAGTCTCTACAAAGATGTGATGCTGGAGACCTATCGGAATCTCGCTGCTATAG
Seq A exon
GCTACATTTGGAAAGACCATAACACTGAAGGACATTTTCTAAGTTCTGGAAGAGATGGAAG
Seq C2 exon
GCACGAAAGAAGTTATACTGAAGAGAAACTTTCTGAATTTACGCAGTATGATAAAGACTTTGCATATCAGAGTCATCCTCAAAGACATGAAAGAATTCATTCTGGAGAGAAACCTTATGAAGGTATCCAATATTTTGAAGCCTTTGCACATCACAGTAGTCTCCAAATACATAAAAGAACACATATTGTAGACAAACCCTATGAGTGTAACCAATGTGGTAAAACCTTTGCATATCACAGTTATCTTCAAAGGCATGAGAGAAGTCATACAGGAGAGAAACCTTATCAATGTAATCAATGCGGCAAAGCCTTCGGACGCCACAGTCATCTTCAGAGGCATGAAAGAATTCACACAGGAGAAAAAAGCTATGACTGTAATCAATGTGGTAAAACATTTGTGCATCACAGTCATCTTCAAATACATAAAAGGACACATATTGGAGAGAAACCCTTTGAATGTAACCAATGTGGTAAAGCCTTTGCTCGAAACAGTCATCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006112-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.117
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGCTGGATCCCTCTCAG
R:
TGCAAAGTCTTTATCATACTGCGT
Band lengths:
140-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]