RnoINT0082091 @ rn6
Intron Retention
Gene
ENSRNOG00000006112 | LOC102554315
Description
zinc finger protein 596-like [Source:RGD Symbol;Acc:7747897]
Coordinates
chr3:145640009-145641654:-
Coord C1 exon
chr3:145641528-145641654
Coord A exon
chr3:145640200-145641527
Coord C2 exon
chr3:145640009-145640199
Length
1328 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TATGCCAATTATGTTTGCAGGCA
3' ss Score
6.9
Exon sequences
Seq C1 exon
GATGTAGTGAACTATGATGATGTGCATGTGAACTTCACGTGGGAAGAGTGGGCTTTGCTGGATCCCTCTCAGAAGAGTCTCTACAAAGATGTGATGCTGGAGACCTATCGGAATCTCGCTGCTATAG
Seq A exon
GTAAGACAGTGAAATTTCTTCCACTTTTTAAAATCTAGGGTGACTGTCTCTTTGTTATTGTTATTTTTTGTAATTTCAGTTGAGAATGAGGATGAGGTGAATTCAGTCATGGTTCTAAGGATCTCTGAAAATAGTAACTTAAATTTTGCCTAGTTTCCAATAATATAACATAGTCTCTGGTACTATATTTCAGGCTACATTTGGAAAGACCATAACACTGAAGGACATTTTCTAAGTTCTGGAAGAGATGGAAGGTAATTTTCAAGTGCAAGCTGATAAGAATATGCCTCTGGAGAAATTTTAGTATGTCCTGCAAGTTTTAAAGAAAAGCAACAGGGTAAAAAAAAAGCACTGCTTTAAGTTATGGGTGATTATTACATAAGGCAAACGATGTATCTCAGTCCCTGGTATATAATTTGTATTTTCAAGCCATTCCTCTAAGTACAAAGCAAGGAAATAATGTCTCAACAGATCTCACCATTTAAATCACAGCATATCCAATAGTTATGCTGTGGAACTGCCAGTGTGTTTAATCCCATACCACTTAGACATTGTGAGGCGTACATACTGAATAGGTGATAAGTATATGTTCAAAACCTTCTAATAGGCAAATAGTCCACACTAAAGTTGGCATCAATCATATACTTGTAATAATGTTGCTAAGTTTAGTAAGAAGGGCAGTTTATGATCAAGAATGCTGCTGTGGAAAAACCTTAATCCCTGTACCACAGTGATTGCCATGTGGAACCCTTTACTTGTTATTCTCCTTTTAATAGGTGGTCATAACATCACAATGGATATAAGCCATGTGAACATAGGAATATTGAAAGACACAACAAACCTCTCCCTCTTCCAGCACAATTAGAAGATCTGTAGTACTCCCCACATTGAGTAGACTTTCTAAATATGCTATAAGTTTACAAATAATTGGTTTTCTAATTTTACTGGTGACATTCACAAACTTATACTGTAGAAAATTGCTATGAGTACTAGGACTATGGAATTCTTCTGTTTGTCTTGGTTCACTCCGCAAATGTAGTATGACCTACACTATAGGCAAGATTTATGAATACAATTGTTGTGCTAGAGCTCTGACTTCTTTCAGTTCTCTTCAGACATATGAAAAAAGATGCTATTAATATGAGCCATGTAATCCATGCTCTTCCCATCCCATGTATTGTCAAAGATGCAAACAACCCATAATGAAGAGTCAGTAGAGTGATAATACATTACAGTGAGACCAAATTGTAAAAGTAATTCATACATAAAAATATCCATCAGTGCATTGAGTGTGGAAATGTTTTTACATATGCCAATTATGTTTGCAG
Seq C2 exon
GCACGAAAGAAGTTATACTGAAGAGAAACTTTCTGAATTTACGCAGTATGATAAAGACTTTGCATATCAGAGTCATCCTCAAAGACATGAAAGAATTCATTCTGGAGAGAAACCTTATGAAGGTATCCAATATTTTGAAGCCTTTGCACATCACAGTAGTCTCCAAATACATAAAAGAACACATATTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006112:ENSRNOT00000008047:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTAGTGAACTATGATGATGTGCA
R:
TGTGTTCTTTTATGTATTTGGAGACT
Band lengths:
310-1638
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]