Special

MmuINT1035475 @ mm10

Intron Retention

Gene
ENSMUSG00000068134 | Zfp120
Description
zinc finger protein 120 [Source:MGI Symbol;Acc:MGI:1345179]
Coordinates
chr2:150114406-150119628:-
Coord C1 exon
chr2:150119565-150119628
Coord A exon
chr2:150118201-150119564
Coord C2 exon
chr2:150114406-150118200
Length
1364 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TATGCCAATTCTCTTTGCAGGCA
3' ss Score
9.92
Exon sequences
Seq C1 exon
GCTACTATTGGAAAGGCCATAATATTTCTGAAGGACATTTTCAAAATTCTAGAAGAAACGGAAG
Seq A exon
GTAATTTTCACGTGCAAGCTGATAAGAAATGCCTCTGAAGAATGTTTTTAGTATGTCCTGCAAGTTTTAAAGAAAACCAACAGGGTAAAAGCAGCACTGCTTTAAGTTCTAGATGATTGTTAAATTCTCGCAAAACCATGTACTGTGCCAGGTATAATTTCATTTGTGTTTGCCAGGCATTTCTCTGAGTACAAAGAGAAGGAAATAATGCCTTAACAGAGCTCACCATTTGAATCATAGCCCAGTAGAGTTAGTTATGCTATACAACTGTCCAGACCTTCTAATAAGCAAATAGTCCATAGTAAAGCTGGTGCTACTGTTGTAATAACATTGCTAAGTTTAGTGAGATGGGTAGTTTAGAAAGTCAAGAATGCTATTGTGGAGAAACTTTAATCCCTGTACCACATGTGTATGAGGAATAAAGGTCAAACTGTGTCAATTCAATGTGGAACCCTTTAAAAAATTTATTATATATATATATGTGTGTGTGTATGTGTGTATGTGTATATATGTGTGTGTGTATATATATATATATATATATATATATATATGTATGTGTATATATATATATATATATATATATACTTGTCTTCAGACACACCAGAAGAGGGTATCATATCAGATTGCAGATGGTTGTGAGCCACCATGTAGTTGCTGGGAATTGAACTCAGGACCTTTAGAAGAACAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAAACTCCCTATGTGAAACCCTTTTACTTGTTAATCTTCTTTTAATAGGGATGTCATATGTCACAATGGATACAAGCCATGTGAACATAAGGAATGTTGAAAGAAGCACCAAACCTCTCCCTCTTCCAGCCCAATTAGAAGATATAAAGTTCTCCCCACTTTGAGTAGCCTTTCTAAATGTGCTACAAGTTTAGAAATAATTGGTTTTCTAACTTTACTGGTGATATCTACAAACTTGTACTGCAGAAAATGGCTGAGTACTAGTACTATGGAATTCTTCTCTTTGTCTTGGTTCATTTTGCAAATGTAGTGTGACTCACACTATAAAAAAACTTAATGAATGCAATCAGTGTGGTAGAACTTTGAGTTCTTTCAGTTCTCTTCAAATGAATGAAAAACCTCTTATAGCAAGAAGATGCTATATATATGAGCCATGTAATCCATGTTCTTCTCATCCCGTGTATCTTCAAAGATGCAAAACAACCCATAATGAAGGAGAACCCCAGTGTTAATAGAGTGAGAATACATTACAACTGGCTTCCTCTTTATAATTAGACCAAATTGTAAAAGTAACTCGTACAAATAAAAATATTCATCAGTGTATTGAATGTGGAAATGTTTTCATATATGCCAATTCTCTTTGCAG
Seq C2 exon
GCATGAAAGAAGTGATACTGAAGAGAAACTTTCTGAATTTACTCAATATGATAAAGACTTTGCATATCAGAGCCATCCTCAAAGGCATGAAAGAATTTATTCTGGAGAGAAACCCTATGAAGGTGTCCAATATTTTGAAGACTTTGCACATCACAGTAGTCTCCAAATACAGAGAAGAACACATGTTGTAGAAAAACCCTATGAGTGTAACCAATGTGGCAAAGCCTTTGCATACCACAGTTATCTTCAAAGGCATGAAAGAAGTCATACAGGAGAGAAACCTTATGAATGTAATCAATGCGGTAAAGCCTTTGGACGGCACAGTCATCTTCAGAGACATGAAAGAATTCATACAGGAGAAAAAAGCTATGACTGTAATCAATGTGGTAAAACATTTGTACATCACAGTCATCTTCAAATACATAAAAGAACACATATTGGAGAGAAACCCTTTGAATGTAACCAATGTGGTAAAGCCTTTGCACGAAACAGTCATCTCTTAATACATAAAAGAATACATACTGGAGAGAAACCCTATGAATGTAAGCAATGTGGTAAAGCTTTTGCTTATCAAAGTGGTCTCCTCTATCATAAAAGAAGATATACTGTAGAGAAACTCTATGAGTGTAACCAATGTGGTAAAGCCTTTGCATGTCACAATAGTCTCCAAGTACATAAAAGAACACATACTGGAGAGAAACCCTATAAATGTAATCAGTGTGGAAAAGCCTTTGGACGCTACAGTTCTCTTCAAAGGCATGAAAGAATTCATACAGGAGAGAAACCTTATGAATGTAAGCAATGTGGTAAAGCCTTTGGACGTCACAGTTCTCTCCAAAGGCATGAAAGAATTCATACAGGACAAAAACCTGATGAATGTAGTCAATGTTGTAAAGACTGTGGATGTTACAATAGTCTCCAGATACATAAAAGACCACATACTGGAGAGAAATACTTTGAGTGTAACCAATGTGGTAAAGGCTTTTCACAAAACTGTTATCTTGAAATACATAAAAGAGCACATACTGTAGAGAAACACTATTAGTGTAACAATGTGGTAAAGCTTTTGCATATCATGGCCGTCTTTGAATACATAAAGTACCATATACTGCAGAGAAACCCTATGAATGTAATCAATATGGTAAAGCCTTTGCATGTCAGACATGTTCAAAGGCATGAAAGAAACCATACTGTAGAGAAATCCTGTGAGTGTATTTAATATGGTGAAGCCTTTGCACATTTCTATAGTCTTCATCATCATGAAAAAAAATCCATACTGGATAGAAACCCTATGAATGTATTTAATGTGCTAAAGCCTTTTCACATTTCATAAGTCTTCATCATTGTGAAATAATTCATACCAGAGAGAAATGAATATATTTAATATGGAGAAGTCTTTGTGTATTTTAATAGTCTTTATTCTCGGGAAACTATTCATACTGGAGAGAAATTCTGTGAGTGGGAGCCTTTGTTTTATGGGGTCCGTTGAGATCCAACAAAACTCAAACTCAGGTAATGCAAGTGACAAGAACTTACTGTACTCAAGCTGCTACTGATAGCTCAGGGCTACAGAACATACTTGGAAACTGAACTGTGACATGCTGCCGAACCACTTCCCGACCCAGAGCAGGAGTGGTACAGAGCTTTTAAGTTCCAAAACCAGAAATATCTGTGCCAAGTTATAGCTCCATTTTTTTTTTTCACCAGGATTTAGGGATCAGGGCTTTCCTTATCTAGTTGATCTATGTTTACTGAAACAGTTTAACTAATCATATCCATTTATTGTTTTGTGATTAGGAACAGGCATTATGTTTTGAGGAACAAAAGATAAATAACAGAAGCCATGGTTAGAGACAGTCAATATGATTTCGTGAACAAAGATGGACAATAGAAGCTGGCCTGCTATTGGGAAGGTCCCAGCTACTGCAGGGCCAGGGAACTTGAATTAGGTGTACCATATGATTAAATGGAGGCTGATAACAAAAAAAAAAAAAAAAAAAAAAAAAATGGCGTACTTAGGACAAGTTTCTTTTACTTGTTTCCAACAGTTGCATATCACAGGCATTTTTGAATACTTGAAAGAATAACAACATTGTAGTGAAACTTCAAATTGTTATCAATGTGATAAAGCTGTTTTACAACACAGTTATATACATTAGAGAACACATACTGGAGAGAAATCCTATGAAGATGCAATGTGGTAAATCCTTTGTGTGTAGTGCAGTAATCTTTAAGGACCTTAAAGAACTGATACTGAAAAGAATCTGTGACTAAAGGATTTGATGAGGTCTGTAGCCAGCACCCTTGCATTCAGTGCCAGGTGTAACATGGCTGTGAATATGACTGCACAGCAGTTTCAGCTGTGGGAGCACCTTCAATCCGAATCACGTACCTCTGGCTTTCTAGTATACAGATGCCATTGCTCTCATCTGCTTGTCTGCCATTGCATTTTTCTATACTATATTTGTCCTCAAATACAAGTCTGGTAAAAAATTTCTGGGAAAAGGATTGACTAGAGAAGGAAATGGCTCTGATATCTATTAGGAACAAACTGTTCTAGCCCTGGCTATTCAAGCAGTCAGCTCAGGCATAATGGCCCAAGGGGTTCTATGGAGATTGACTGACTTAATTGTTCTATGAGACATTTTTGCCAAGTCATAAGGAAATATTTGAAGCAGGAAATGTTTTTGAGAAACTTGAAGTTTTAATAGTTAAATGAAGACCCCCCCCCTCCCCCAAGGAAAAGGAACATGGGGCTTGGGTCACTAAGAGCAGGGATGGCTATAGAAAACACAATGAACAAGATAGAGGAAGAAATAGCTGGGTCTACTGGTTAAGGAAGCAATGGTGAGAGTCCCCATGAGAGGAGATCTCTGATAATAGGTTTCATTTAGAAATATTATTGGGGAAAATTGGAAGATATATAGTACAAAATATAAAAGGATGGGTATAAGTGTTTAGACCCCACAAGTATTGAACAATACTAGGTTACTATTGAACAAGACTAACTCAGTTACTGGTCCTGCCAGAACTGCTTCTATTACATATAGTCAGCTGCTCTTTGTTTTTAAATTAACTTGCTTATTTATTTAAGCTGTTACTATCAATCACTGCCATTTAGCATACAAAATCAGGTCTAAGAAATTTCTGTCAGCTCACAGAAATTGGATTAGGCCATTGGATTAGTGAATTGACCTTCCTGGAAAGATTGGATCATTTAACCCTCTGGCATCGCCTACCTAAAGGGAACTAGGGTATACATTCTAAGAGAATTTGAGCTTCTGAAGGAGCTCTTCAAGAAGCTGTAAAAGAAGTTAATATTGCATGTGGAAAATAATTAGAAAAACACTGTAGAAATAGATATTTGGAGGAGTTCAGTAAATTGGAGGAAGAGATTCTGCAGTTAGACAAGCTAAAAACACGAACATTATCCTGACCTGTTTAGCACCTCTCTGTTTGCATTCTAATTCTGTAACTACAAGTTTATGCCCAGATGGTCTGTGATGTGGAGGTTCTTCTGAGAGTTAAAAGTTAATGGATAACTTGCTTTTGCAGACACTGAACTGTAAATTTATGTGTGCTTTGTGCTTTCTGGTGACATAGTGACGTGAGGGTTTGCAGGAAAAATAATGGATTTGACGAAAATAATGAAAAGTCTTTTGCTTATGTATTACTGTATAACAAGGAAGTGTGTAACCAATAAAAGACTGAGGTGAACTCAGAGAAAGAACCTTCAAGCTGTCTCCGAGCACAGCTTCAGAACAGCAATGAGTTGCCTGTCAGTGTGCACCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068134:ENSMUST00000089207:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.386 A=NA C2=0.070
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000114205





     
                   









    
Main Skipping Isoform:
ENSMUSP00000086615





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
chr3:145640200-145641527 
ALTERNATIVE
RnoINT0082091
(LOC102554315)
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr3:10796524-10796680 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGGCCATAATATTTCTGAAGGACA

				
R: 
ACCGCATTGATTACATTCATAAGGT

				
Band lengths: 
355-1719

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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