MmuEX0053045 @ mm10
Exon Skipping
Gene
ENSMUSG00000037029 | Zfp146
Description
zinc finger protein 146 [Source:MGI Symbol;Acc:MGI:1347092]
Coordinates
chr7:30161269-30169750:-
Coord C1 exon
chr7:30169666-30169750
Coord A exon
chr7:30163327-30163373
Coord C2 exon
chr7:30161269-30163228
Length
47 bp
Sequences
Splice sites
3' ss Seq
TTCTTTGTGATCTGTTGTAGAAG
3' ss Score
8.06
5' ss Seq
GCGGTCAGT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GAGTGCGCAGACGCAGGGGCAGCGAGTGGACATTTTGGTCTTTGTCCGCGGGTCAGCACGGCCGTCGTGTCCACGTGGCGCCAAA
Seq A exon
AAGCAGCTGAGGAGTGAGAAGCACACAACAACACCCACATCTTGGCG
Seq C2 exon
AACAGACTTCAATTTTTAAAAGGCAAAACATTGTTCAAAGCTTAAAGTTTTGAGCTTGAAACATAGTTTAGATTTAAACAGTTGTATGGGAACACATCCTCTGCTTTATACAGTTGGAAGTCCTCCACCATAGCCTACGCCTGGTAAGAATGTCTTATAAGTAGAGTGCGGTGTGGAAATGCCTGCAGTTTGTTAGTGGGGAGCACAGAGCAGAGGGAAAGCCGCTGAGTTTCCAGAAGCCGGGAAGCGTTTACTGAAGTGTCCGGTCTCCCTGAGCAGAGAAGTCCTGCTGAGAGGAAGCCCTGTGTCTGTAGCTCAGCTGCAAAGCCCTGAGCCGGATGGCGGCGCGCTCGGCACTGCTGGAGGAAAGCAAGTGAACTTCGCAGAGACAACATTGGCTATCAGTTAAACTTGGCCTGGGAAGAACGTTTGTTCTGATAAAGCTCTCTTAAACCTCCTCCCTTGCTCTGCATTTGAGTGAGCAGGCAGGCACAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037029_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.9),PF0041217=LIM=WD(100=17.1),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGTCCGCGGGTCAG
R:
AGGATGTGTTCCCATACAACTGT
Band lengths:
148-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types