MmuINT0178642 @ mm10
Intron Retention
Gene
ENSMUSG00000037029 | Zfp146
Description
zinc finger protein 146 [Source:MGI Symbol;Acc:MGI:1347092]
Coordinates
chr7:30161269-30169727:-
Coord C1 exon
chr7:30169659-30169727
Coord A exon
chr7:30163229-30169658
Coord C2 exon
chr7:30161269-30163228
Length
6430 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
TCTTTTCTTTCTTTTTGCAGAAC
3' ss Score
12.56
Exon sequences
Seq C1 exon
GAGTGGACATTTTGGTCTTTGTCCGCGGGTCAGCACGGCCGTCGTGTCCACGTGGCGCCAAAGTAGGAG
Seq A exon
GTGGGATCTGGGCGTCCTGGGTCGGTGGGTTCGGGAGGTTGGAGGGCAGTGTTTCCGATCTTTGGAGGTGTAGCGCGGGGTTCAGGGAGTGGGCTGAAGAGCATTGGATCTTGGTGAAGGCGGAGGTGGGGGCCTCTGAGGAAAGCTTGAGCGTTTGAGACCGAATTTGACTGCAAAGTTTGACCCACTATTTGGAATGATTGAGTGGGTGTGGAGCTGGGTGTAGGATTGTGGGTGGCTATGCTTCACGAGGCAATGAGGAGACCCATGTTGAAGTATCACGTCTGCGCGGTAGTTCCCGAGTCGAAAGTGCTGATAATTATAACGGGGCCATCTTCCCGAAGAGCATCCGTTTTATTTGATTACTTGAAAGGTGGGATGAAGCTAAGGGTTAAATACTTTTAAAACTGTATTTATTGATGGTGAGTTTTATACGCAAATGCATTTCGTGATATGTGCAGAAAGCCTTAGTAAACATGTTTAGATTTTAAAAGACGATCTGTGTACTAAAACGCGGTTGTTTATGAATGGAGGTAGAATACAGATTACTCTGTCATGCTTAATTAAGGAAACATTTGGTTTGGAATTGTTTGTCCCGGGGGTGCCAGCCATAGACTTCATTTCTGATTTTTGAGGTACTTTAATAGAGCTGTTAGGCAAATTCGAGTTTCGGTTTGAAGAGCGTCATTTCACTAAAAACCCAGGATTAAGGGGTCTAATTTAGATTTAGGTTAGGCACAGTTCCTCATTTAAAGCATATATATATATATATATATATATATACATTTATTTGTGTGGGCATGCTTGCCACAGTCGGTTCTGTCCTCCATCATGTGGGTTTAGGGTCGGAATCCAGGTTGTCAGCCTTGGAAGCAAAGCGCCTTTGCACACCCCCCCCCCCAAGCTCTCTCACTGGTCCATGTTTTTAGTTTTTTGAAAAAAACTTAGTGATTACTGTGCTATATCGTAGATGTCATAACTCCTTCACGAGTACAGTTCTGTGAATTGTGTAGCACATGTGAAAAACTACTTCTCCCTGCTGTGGCAGTCATTAAAGACATCCGCAGCTTTGGCTTTTCTCCTAATGGTAAAAGTTAAGCAGTACCTGATTAAGATTTGCAAGTGGGTAGCTTTCAAATTTATGAATAGCTGCCACTAGTTGATACATTGTAAAAACAAAAAACAAAAAAACGAAACAAAAGTAGTTTTTTAAATATCACTGAAGCTGGACACATACACACCTTTAATTCCCAACACTTGGGAGGCAGAGGCAGTTGGATCTCAGAGTTTCAGGACCCCTTAACTACACAGAGAAACCCTGTCTTGAAGAACAAAAACAAAATGACAAGAAATCCCCCAAAGAAAAGCAGCTAGAATGTGAGGGTTTGCTTGTTGCAATTTTTTGGAGGTAATGTGTATTGACTCTTGACTGGGCTATATCCCTAGCCCACAGTTCTGGAAATTGATGCTACAAATGTATCTACTATGTTTGAGTGAAACAATACAGACACAAGTTTGCTCGTGACAGCAAAGTTTAGCCTAGAAAAGTATTAGAAACATTTCATGCTCATCCATTAAAGGATGGTTCGGTTGACCTATGATAATAAGCTTATCCAGTGGTCGTGCAGAAGAATGAGGAGGGAGCTTTATATAGACACTGAAAGGTCTCAGACATAGTAGGACAAGGTTCAGAATATAGACTTGTCAGGAATAAGGTAGCTGTCTTTGAATTTCTTTCTATTGGGGAAAAAGCTTCAGGATAGATAGATGTGTGTGTATACACACACACACACACACAGAATGATTGTTACTGTGGGATAGGGGGTACTAGAATGGATAGGCCAAAGGCAAGTAACCCCATTTACTTTATAACTTACACATATGAGTGTAGTATATGTTCTAAAGTCAGCTTCTTAAATCATTTATTTATGTTTGTGCCTGTGTAAGTTTGGGCACCAGCAGAGTCTTGAAACCTCAAAACCCTCCCCTAGTGACACGCCTCCTCAGACAAGACCTTACCTCCTAATTCTTCCCATAGAGTCCTGCCAACAGGGGACCAGTTATTGAAATACATGAGCCCATGAGCTATTCTCTTTCCACCAACTACAGGAATGTAAAGTTCCATTACACTTAGCTACTGAATGTGAATTCAGCCAACTTACCATATTTTCACTTGCACTAATTTACCATTTTTTTCTGAGATCAGCTGACTGTCATCCTGGTTACCCTGTATAGCTTAGCTTTGCAGACAGATTGGCCTTGAACTTGTTGCAGTCCTTCCACCTCTGCCTCCGGGGTGCTTAGATTACAGGGTTGTGCCGCCATGCTCGGCAGTGTATAGTGTTCGCCTGTTCCCTGTGCTGTTTTCCTAAAAGGAAGTCTAACATGGTCACTTTGTCAGCTGATGCAGGTCTAGAGGCAGAGCTCCACAGTCAACTGCAGCAGCCTGAGCAGTTCCTTATTGTTTTAGGAACCATGACTCAGGTGACTCCAACTTAGAAAATATTCTGCGATTTTTGAGATTGTATTTTAATTACATTTCTCCCTTCCCTTTCCTCGATTTATCTGAACATGTGTGCTCTCTCGAGTGACACATCATGCATAAGGCACTCAGGACAACTTGAAGGAGCTGGTTCTCTTTCCACTATGGTGGTAGAAAGATTAAACTCAGTATTTCAGTATCCACCTCTACTTGGTGATTTTTGCCTGCCCCAAAGTTGGAGTTTATTAAAGTTTTTAGGGACAGGGTATTATTTAGCACAGGCTGGCTTTTAACTGGCTATGTGGTAGCTATGGCTGATCTGTCTCTACTTCCAGACCTGTAGAGTTACCGGTGTGTGCCAACACAACCAATTTCGGTGGCGCTAGGGATTGAACTCACGGCTTCTGATAAGCTAGGCGAGCAGTCTTCCATTTGAGACACACGTCCTCGTCCTGAAGATACCTTAACACAGACTTAAAATCATAAGGGTCAAGAGGCGTGAGGGCACCCAGAAAGGAAGGCGTCCCATAGCACGTGCGTGGGCTTGTCAAAGAAGAGCGGCACTTGACTGTCTCGGCAGGAGTCACAGACGTTCCTGTAGATTAGGAGCTATTATCTTCAAAAGATTGCTAAGGAACTTCACAGGGTGTTTACTGAGGTGCACCTGGTGTGCTTCTGTATAATCAATCAATCAATCAATCAATCTTGAAAATAAAATAAAACTCCCTCACAGGGCTGCAGTAACTTAGGAGAGCTTCTCTGTAAACAAGTTAACAGTCTGATTTACGATTCCCAAAATCCCTACCAAGGTTATATACATTTAGGCCTTGAGGTTGGCTCATTGTTATTAGTATGGAAACTACCCAGGGTCCGGAGACTGGTTCATTTCAGTAAAGTGCCTGTCATGACAGTGTGAGGGCCTTAATTCAGGACCCCCCCCCCCCCCCCGTACAGCATTAATACAGCATTCCTGTAATAATCCAGGCATGCTGGCACCCTCAGCCTGCTCCTGCCTCAGATCATGAGTAACTGGGATGATAGGCTTACTTTTTTTCTCTCTCTTTCTTTCCTTTTTTCATGTAAATTTTAGGATTGGCTTATCTAGTTCTGAGGAATGGAGAATGCCCCCCTAAAATTTTCTATTGAGATTGTATTACGTTTACAAAATAATTTAGAGGAAAGCAGCATCTTTGTGATGTTAGACACTCCGATCCGTGAGCATGTGCTTTGTTCAGGTGGCATTTGGGGTCTTAAATGTTTACATTAAAAACAGCCCAAACGTTATTGTGAGTGCCAGGTGTATAGGTGGGTGCCCAGGTGCCAAGGTGCCATCTGTGAGGGCCAGAAGACAACTCAGTAAGATCTCTTCTTGCATGTGTATGTGAGTTCTAGGTTCTGACCTAGGTTGTCAGGTTTGCACAGAGGGCCATCGCAGCAACCCTGAATGTCTTTACAGAAGTTTTAGTCTATTACTACTGTTACTGTTATTCCTTCTGAGTGCTACAGTGAATGTGGCGATAGTTATTAGAATATAGGAAGCTTTGTAGTTTTTGTGTCTTGTTGTTGTTGGGTGCCCCCCCCCCCCCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAGCTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGACGTACGCCACCATGCCTGGCGCTTTTTAGCTTTTTATTAACTCTTTTCTTGGCATAGATTACTGTGTTGTTTATATTAAATAATATTGAGATGGGGACACCCTTGTGTTTATTTGGAATTTGATATAAACAGTGTGGCTGTGGCTGCTGCTGGGGATTGAGACTCCAGAGCTGCTGGGCCAAGCACTGTTGCTGAGCCACATGAGGTGCTTTTATGTTAGGCAAGATGCAGTCTTTACTTGTCCCGTGCGGGATATGATTTGTGTTCTAGTTACTTTTCTATTGCTATGAAGAGACACCGTGACCAAGGCAACTCATTAAAGAAAGCGTTTAGTTGGAGACTTGCTTACAGTTTCAGAGGGTGAGTCCATGACTGTCCTGGTGGGGAGTGTGCCCACAGGCAGGCCTGGTGCTGGAGTGGTAGCTCAGAGCTAATATCTTATTCACAAGATGTAGGCAGAGAGAGCGTGAGCAAGACTGGGCTTGTTTGGCGAAGCTCATTAAATGTAGCTACCAAGAAGATGTAAGTGTCAAACAAACTGGTGTGTATTACAAAATACCAAAAAAGCCTGCAGGCACACAGTGTCTTACAAAGGAGATGAAGGACAGTAGAAGAAAAGGTATAGTAGAAGTAGAACACTCAAAACTCTATAAAGGCTCCATTGTGGGGGCAGACAGGAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGGCAGGGGAATAAACTGAACTGGTAAAAGGCAGGTGAGATAGATTACATTATAACTGATCAAGAACATTATAAAGATGCTGAGGTTACAGTGCACAAACCTGACAAGTGTGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGAGGGCTTAACTTAGAACCTCATGAGTGCTAGGCAAACATGCCAATGAGCTATATACTAAAAAACCTGAAATTTTATTGTTCATAATGGGGGGTGTGTGTATGTATTCCTCATAATGGGGATATAGCTATATTTATATGTGAGTGTATATATATGTATGTATATATTTGAGATGATGTGTATATACATATATTTGAAATTAAAGTATAATTACATAATTCTCCCCTTCTTCAAGTCCTTGCATTTCCTTTCCCCTGCTCCCTTTCAGATTCCTGGCCTCTTTTATATGTATGCATGTACGCAGTTCATTTAGTGTTACTGGTGTGTATATGATTTCTGGGATGACTAAATGGAATTGGATAACCAATAAGAGGGTTATCTCTGGGGAAGCCCTGTTCTTTCAGCATTCCTTAGTTGCTGGTGTGGGGCCTGATGAGATGTCTCCCTTTGATGCTGTTGTGTCTATTGGTGTTGGACCTGCTCAGGTCCTGTTTTGGCAGGCCTGTAGTTGAGTATCAAAGGCAAAGCCTTCCTGTCTCAGTTCTAGAAGACATAATCTCTGGCTCTTACTGTCTGTCCACCCCCTCTTCCGTGACGTTCTTGTGCAAGTGTCATGTCTGTTGGTGCTGTCACCCTACAATCAGTTGTGTTCTGCATTTTGACCAGTGGTGGCTTCAGGGATGGTCTCCATCTACTGTAAAGAGAAGGTTTTTTTGATGAGGGGTAAGAGCCACAATTAACTGGATTTAAGGATACACATTTAGAGTATCATTAGAAATTGGGCTGGTTTAATAAGGTGCCAGTGGTAGGGGTTCCTCTTAGATCCATAACCTCACTAACCCCAGGTAGTTGGCTAGGTCTCCATTACCAGACACTATTTCCCTCCTGTTGAGTATGTCTTAAGTACTATTAGAAAACTGTTGATTACCAAGATATGAGTGCCACTAATAAACCCAAAGAGAAAGCTTGCCATGCTGGCTGTTGATATGGGTCAATGGTGGTGTTACCCTCGGGGAGAGCTTGCCATGCTGGCTGTTGTTAGGTTCATGGGTGTCACCCTGGTTGCTTCCCTCTCTTGGAAACTTGCACAGCATGATCTAGTTCTATGAAAGCTAGTCCTCAGTTAGCGGGGAATATCTAAGTAATATTAACTGGTAGAATTTGTTGAGTGCTTACCATCTATCAGCCATGTTCCTTTAAATAGTTCTTTGTGATCTGTTGTAGAAGCAGCTGAGGAGTGAGAAGCACACAACAACACCCACATCTTGGCGGTCAGTTGACGCCACCAGGGGGAGTGGTGAACGCAGGAATCGGAATTCTCTTTTCTGTGCTCACAGACTTCATTTCTTTCTTTTCTTTCTTTTTGCAG
Seq C2 exon
AACAGACTTCAATTTTTAAAAGGCAAAACATTGTTCAAAGCTTAAAGTTTTGAGCTTGAAACATAGTTTAGATTTAAACAGTTGTATGGGAACACATCCTCTGCTTTATACAGTTGGAAGTCCTCCACCATAGCCTACGCCTGGTAAGAATGTCTTATAAGTAGAGTGCGGTGTGGAAATGCCTGCAGTTTGTTAGTGGGGAGCACAGAGCAGAGGGAAAGCCGCTGAGTTTCCAGAAGCCGGGAAGCGTTTACTGAAGTGTCCGGTCTCCCTGAGCAGAGAAGTCCTGCTGAGAGGAAGCCCTGTGTCTGTAGCTCAGCTGCAAAGCCCTGAGCCGGATGGCGGCGCGCTCGGCACTGCTGGAGGAAAGCAAGTGAACTTCGCAGAGACAACATTGGCTATCAGTTAAACTTGGCCTGGGAAGAACGTTTGTTCTGATAAAGCTCTCTTAAACCTCCTCCCTTGCTCTGCATTTGAGTGAGCAGGCAGGCACAGAAAGAAGCCCTCGGACTGTAAGAAATGTGGAAGCATCCTCAGTCAAGAGCAGAGCCTCGTTTGTCTGGACTTCCCTATTGCAGAGAAGCGCTGTGAATGAGATCACTCTTCCACTCAGATGTCACAGCTCAGCCAGCAGAGAATCTTAAGCGGGGGAAGCCCCTTTGCCTGTAAGGTATGTGGGAAACTCTTCAGCCACAAATCGAATCTTACAGAGCACGAACATTTCCATAGTAGAGAGAAACCGTTTGAGTGTAACGAGTGCGGGAAAGCCTTTAGCCAGAAACAGTATGTCATCAAGCACCAGAGCACTCACAGCGGAGAGAAGCTATTCGAGTGCAGTGACTGCGGAAAAGCCTTTAGCCAGAAGGAAAACTTGCTTACGCATCAGAAAATTCACACTGGAGAGAAACCTTTTGAGTGCAAAGATTGTGGGAAAGCCTTCATTCAGAAGTCAAACCTCATCAGACATCAGAGAACTCACACGGGGGAGAAGCCCTTCATATGTAAGGAGTGTGGGAAAACCTTCAGTGGCAAATCCAATCTGACGGAGCACGAGAAGATTCACATCGGAGAGAAGCCCTTCAAGTGCAACGAGTGCGGAACGGCTTTTGGCCAGAAAAAGTACCTGATAAAGCACCAAAACATCCACACCGGGGAGAAGCCGTACGAGTGCAACGAGTGCGGCAAGGCCTTCTCGCAGCGCACGTCGCTGATTGTGCATGTGAGAATCCATTCAGGCGATAAGCCTTACGAGTGCAATGTATGTGGGAAAGCCTTCTCTCAGAGCTCATCTCTAACCGTGCATGTGAGGAGCCATACGGGTGAGAAACCCTACGGGTGCAATGAATGTGGGAAGGCCTTTTCTCAGTTCTCAACCCTGGCCCTGCATCTGAGAATACACACAGGTAAAAAGCCTTATCAGTGCAGTGAGTGTGGGAAGGCTTTCAGCCAGAAGTCCCATCACATTAGACACCAGAAAATCCATACTCATTAAACGCCCTGAATATCTTCAGTACGGGGAAGTGTTCATTAGGAATTTATACCTCATAGCGCATCGTTTGGTCACTCTGGCTAAGCACCATAAATCAGCCAAACATTTAACAGAAGATGTCGTGAACACCGGAGAATTCACAATGAAGGGAAAGACATGTGTATGATACAGGCCTGCAATCAGCGAATGCAGCGGTGGAAAAGCAGAGCAGTGCTGAACTGTGAACACAGTCGTCTGCGGTCAAGAGTGGCAGGCAGGCAGGCCTGTTGTGACGGCTGTCAGTGTGGATCTGCGGGTTGTCACTAGTCCAGGTACCGAGGACAGACGTTATAGAGTGACACTGTCCATTTACCAGGACTTAGAACATGAAAACACTTGCTTCAGCTGAACACCAAGACGACGTTTGGAGGTGAAACCTGCACACCACAAACTATAACCGATAGTAAAAGTCAGATATATGGGGGGTATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037029:ENSMUST00000062181:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.9),PF0041217=LIM=WD(100=17.1),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types