MmuEX0053117 @ mm10
Exon Skipping
Gene
ENSMUSG00000042097 | Zfp239
Description
zinc finger protein 239 [Source:MGI Symbol;Acc:MGI:1306812]
Coordinates
chr6:117862881-117873291:+
Coord C1 exon
chr6:117862881-117863120
Coord A exon
chr6:117869218-117869273
Coord C2 exon
chr6:117870256-117873291
Length
56 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTTTTTTTTTCAGAAC
3' ss Score
11.21
5' ss Seq
CCGGTTGGT
5' ss Score
5.21
Exon sequences
Seq C1 exon
CATCATCATAACAAGTAAAAGACACCTTGGGGGAGTATTTTAAAACTGTATGTGTCTGCAACGAAAAGAGTGCACAACAACTTGAACTATTCAGGGCCAACCACAACCTCAAACTGGGGGCTCACAAGAGTGAGCCCATCGTCGCCGGAAGTGAGCTCGGAAGTAGCGCTTTCCTGCCCGCAGCCTTCTGGGACTTGTAGTTCGAATCCTCGATGATGCTCGGGAGTCCTGCGTTACCAG
Seq A exon
AACTCTGAAGGCATGACGGTTTGAGCTCTCGTGCCCGCAGTCTGCTTCCACAGCCG
Seq C2 exon
GAGAGTCAAACACAAATTCTGTGGAGAATCTTCAAGAGAAAGACCTTCAAGAGTCTGGAGAGATGACTCAGAAACCAAGAGCACCCCTAGCTCCTGTAAGTTCAGTCCCCAGCACCCACATGGTGGCTCACCATCCATCACTCCAGTTCTAGGAGAGCCAAGGACCTCTTTCACCTCCATCAGGACCATACTGGCATGTGCTGCACAGGCATCCTTGCAGGCAAAACACTTAACACGTGAAATAAAAATCTTTAAAGTGAGAGAAAGAGAAAAGACTTCAGGATTTTTCCTAGTGGCTGATTTTGAAAGAAATGGCCAGTCAGTAGCTGGAAGTTGAGTTTATATTGTGAATCTTCAAGAGGTACACACCAATACTGAAGTAGATTGCTGTCAAAAGTGGGGAGAAGTGTCTTGCCATATTTCCCAAAACCACAGATTTCGGTGACTCTTTAAAGTTATTTCACCAACATTGAAAGTGGAAAAAAAATTTTTTATCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042097_MULTIEX1-4/5=C1-C2
Average complexity
C2*
Mappability confidence:
88%=88=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=13.4),PF134651=zf-H2C2_2=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=12.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCTCGATGATGCTCGGGA
R:
CTTACAGGAGCTAGGGGTGCT
Band lengths:
136-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types