RnoEX0000441 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr4:149901986-149916526:+
Coord C1 exon
chr4:149901986-149902385
Coord A exon
chr4:149906501-149906556
Coord C2 exon
chr4:149907295-149916526
Length
56 bp
Sequences
Splice sites
3' ss Seq
CCTATTTTTTTTTCTTTCAGAAT
3' ss Score
10.96
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
CTCGAACCCACAAACCTCCTGCCTCAGTCTCCCTAATGATGAGATTATATGCTGTGGTTACATACACTACACTGTTCACTTAAAGTGGTAACGGCTTCATAATAATTTTAAGGTCGAAGATAATTTTATATTGGTTATTTATCCTCCAGCATCATCTTAACAAGCAAAAGACACCTTGGGAAGTATTATGAAACTGTATGTGTCTGCAACGAAAAGAGTGAACAATAATGGGACCAGCCACAACCATAAACTGGGGATTCGCAAGAGTAGCGGCGGCCCATTGTCTCCGGAAGTGGAAGTAGCGCTTCCCTGCCTGCGGCCTGCTGGGACTTGTAGTTCGAGTCCTGGATGATGTCCCGGAGTCCTGCGTTACCAGGTGTGGGTTCTACCTACGCAAGAG
Seq A exon
AATTCTAAAAACATGAACATGTGAGTTTTCATGCCTGCAGTCTGCTTCCACAACTG
Seq C2 exon
GAGAGTCAAACACAATTCTGTGGAGAATCTTCAAGAGAAAGGCCTTCAAGAGTCTGTCGAGATGACTCAGAAACTAAGAGCACCCCTGGCTCCTGTAAGTTCAGTTCCTGGCACCCACACAGTGCTTCAGCATCCGTCCCTCCAGTTCGAGGAGCTCCAGTGACCTCTTCCACCTCCAGCAGTACCAGGCAGGCATGCTCGGCACAGACACACTTAACACGTGAAATAAAAGTTCTTAGCACAGGAGAAAGAGAAAAGACTTCAGGCCTTCCCATAGGGGGCTTCTTGGGGGCTAGTTTGGGAAGAAATGGCCAGTCAGTAACTGGAAGTTGAGTTTGTATTGTGAATCTTCAAGAAGTACACAAGGATAATTGAAATAGATTGCTGTCAAAAATGGGAAGAAGTGTCTTGCCATATATCCAAAAACCACAAATTGTGGTGACTCTTTAAAGTTATCTCACAAATATTGAAAGTGGAAAAAAATATTTATCTTTGAAATC
VastDB Features
Vast-tools module Information
Secondary ID
Rn.166748_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCTGGGACTTGTAGTTC
R:
TCGACAGACTCTTGAAGGCCT
Band lengths:
142-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]