MmuEX0053134 @ mm9
Exon Skipping
Gene
ENSMUSG00000060510 | Zfp266
Description
zinc finger protein 266 [Source:MGI Symbol;Acc:MGI:1924769]
Coordinates
chr9:20312463-20325852:-
Coord C1 exon
chr9:20325788-20325852
Coord A exon
chr9:20325464-20325563
Coord C2 exon
chr9:20312463-20312629
Length
100 bp
Sequences
Splice sites
3' ss Seq
GGAATTATTTTCCTCCCCAGAAA
3' ss Score
7.07
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CCGAGCTCTGAGTCCTTCTCGGCGTTTGTCCGAGGGCTCTCCACGCAGCGCTCGGTGAGGATTCG
Seq A exon
AAAGAATAGACTTTTCGCCATTGGTATCACATTGAGACGCTGCATTTTCCATTCTTGGACCGGGCGATTCTGTTTGGGGGAGCCGAGCTTTGGCTGAAAG
Seq C2 exon
GACTTCTAGATCTGTACAGAACAGGATATTTTCTGTGTCCTTCCCTGCTCTGCTCATGCCTACCACAGGAATAGGACTTCCTAATAATTTGCTGAAAGAATTAAAGAATAAGCCAGACCTGAAATAAACCAGTACCTCCAGTACCTCCAATAAATGAAATAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060510_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGCTCTGAGTCCTTCTCG
R:
TCATTTATTGGAGGTACTGGAGGT
Band lengths:
222-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: