MmuINT0005447 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:20325464-20325863:-
Coord C1 exon
chr9:20325788-20325863
Coord A exon
chr9:20325564-20325787
Coord C2 exon
chr9:20325464-20325563
Length
224 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
GGAATTATTTTCCTCCCCAGAAA
3' ss Score
7.07
Exon sequences
Seq C1 exon
CCCCCTTTTCTCCGAGCTCTGAGTCCTTCTCGGCGTTTGTCCGAGGGCTCTCCACGCAGCGCTCGGTGAGGATTCG
Seq A exon
GTGAGGAGCTGCGGGGGCGGCGCGGGGAGGGCGAGGACTCGGTAGGCCTGTGCGGGGAGGCGGGCCGAGCTCTGCTCGCGGGGTCCCGCGGCTTCCCGGGCTCTGCAGCCTTCCCGGGTGCCGCGGCCCGAGTGCGCATCCCGACTCAGCCCTGAGCTGTTTGCACCCACCTTTCTTCTAAAGCCGGTGTAAAGTAACCTTCGTGGAATTATTTTCCTCCCCAG
Seq C2 exon
AAAGAATAGACTTTTCGCCATTGGTATCACATTGAGACGCTGCATTTTCCATTCTTGGACCGGGCGATTCTGTTTGGGGGAGCCGAGCTTTGGCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
-5730601F06Rik:NM_001082485:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTTTCTCCGAGCTCTGA
R:
AAAGCTCGGCTCCCCCAAA
Band lengths:
166-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: