MmuEX0053169 @ mm10
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72312651-72319315:+
Coord C1 exon
chr9:72312651-72312760
Coord A exon
chr9:72318724-72318841
Coord C2 exon
chr9:72319092-72319315
Length
118 bp
Sequences
Splice sites
3' ss Seq
TAAATTTTTGTTTTGTTAAGATA
3' ss Score
4.92
5' ss Seq
CAGGTTGTC
5' ss Score
-1.28
Exon sequences
Seq C1 exon
GTGCAAATTGTTCATCAAGTCAATCTAAAAATGGAACAACTTTTCCAAGAGCATGTCCCAAGTGTGATATTCACTTCAATCTTTTGGATCCTCTAAAAAATCACATGACG
Seq A exon
ATAATGTTTATGGGCTGGCGAGATGGCTCAGCTGTTAAAGGTGCTTGCCGCCAAACCTGACGACTTGAGTTCAATCCCTGGAACCCACGTGGTGGAAGGAAAGAGCCGACGTCCGCAG
Seq C2 exon
TATTGTTGTCCAGACATGATAAATAACTTTTTGGGATTGACTAAAGCAGACAATTTAAATTCAGCAAATGAAGCTAAGACTCTTGAATCAGAGAAAGGAAAATTGATAATGTTAGTTAATGACTTTTATTACGGAAAACATGAAGGAGACGTCCTGGAAGAACAGAAGACTCATACAACCTTTAAGTGCTTCAGTTGCTTAAAAGTTCTCAAAAATAATATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX3-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.128 A=0.077 C2=0.067
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PD(14.0=16.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTCCAAGAGCATGTCCCA
R:
GTCTTCTGTTCTTCCAGGACGT
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types