RnoEX0101199 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78893331-78898065:+
Coord C1 exon
chr8:78893331-78893440
Coord A exon
chr8:78897472-78897589
Coord C2 exon
chr8:78897842-78898065
Length
118 bp
Sequences
Splice sites
3' ss Seq
TAAATTTTTGTTTTGTTAAGATA
3' ss Score
4.92
5' ss Seq
CAGGTTGTC
5' ss Score
-1.28
Exon sequences
Seq C1 exon
GTACAAATTGCTCATCAAATCAATCTAAAAATGGAACAACTTTTCCAAGAGCATGTCCCAAGTGTAATATTCACTTCAATCTTTTGGATCCTCTGAAAAATCACATGACG
Seq A exon
ATAATGTTTATGGGCTGGCGAGATGGCTCAGCTGTTAAAGGTGCTTGCCGCCAAACCCGACGACTTGAGTTCAATCCCTGGAACCCACGTGGTGGAAGGAAAGAGCCGACGTCCGCAG
Seq C2 exon
TATTGCTGTCCAGACATGATAAATAACTTTTTGGGATTGACTAAAACTGACAATTTAAATTCAGCAAATGAAGCTAAGACTCTTGATTCAGAAAAAGGAAAATTGATAATGTTAGTTAATGACTTTTACTATGGAAAATATGAAGGAGATGTCCAGGAAGAACAGAAGACTCATACAACCTTTAAGTGCTTCAGTTGCTTGAAAGTCCTCAAAAATAATATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631-'15-20,'15-19,16-20
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.249 A=0.625 C2=0.101
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PD(3.2=16.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000089335fB16901
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCAAGAGCATGTCCCAAGT
R:
TGAGTCTTCTGTTCTTCCTGGACA
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]