MmuEX0053185 @ mm10
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72351525-72360341:+
Coord C1 exon
chr9:72351525-72351570
Coord A exon
chr9:72359522-72359580
Coord C2 exon
chr9:72360286-72360341
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCTTAGTACACTCTACACAGTGT
3' ss Score
2.83
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
AATAAAAACTGAAGCTCCCACTAAGGGACAAGAACCTGTGTCTAAG
Seq A exon
TGTCTGTGCTTGGAGGCTGTTGCTTGTCAGGGCCTGAGAACCGCTCCCACTAGACGAAG
Seq C2 exon
GAAACAGCAAGACATAGTAGAGCTGAAGGAGAGCCAGGAGCATCACATTCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX5-7/7=6-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=0.048 C2=0.679
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAAACTGAAGCTCCCACTAAGG
R:
CTTCCAGAATGTGATGCTCCTGG
Band lengths:
100-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types