MmuEX0053185 @ mm9
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72199332-72208148:+
Coord C1 exon
chr9:72199332-72199377
Coord A exon
chr9:72207329-72207387
Coord C2 exon
chr9:72208093-72208148
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCTTAGTACACTCTACACAGTGT
3' ss Score
2.83
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
AATAAAAACTGAAGCTCCCACTAAGGGACAAGAACCTGTGTCTAAG
Seq A exon
TGTCTGTGCTTGGAGGCTGTTGCTTGTCAGGGCCTGAGAACCGCTCCCACTAGACGAAG
Seq C2 exon
GAAACAGCAAGACATAGTAGAGCTGAAGGAGAGCCAGGAGCATCACATTCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX1-26/27=25-27
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=0.050 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAAACTGAAGCTCCCACTAAGG
R:
CTTCCAGAATGTGATGCTCCTGG
Band lengths:
100-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: