MmuEX0053184 @ mm9
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72186819-72208148:+
Coord C1 exon
chr9:72186819-72186855
Coord A exon
chr9:72199332-72199377
Coord C2 exon
chr9:72208093-72208148
Length
46 bp
Sequences
Splice sites
3' ss Seq
ATACTTATTTTGTTTTTAAGAAT
3' ss Score
7.1
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TTTCTGTTTGTATCCCAACTTCTGAACGTCTTTCTGA
Seq A exon
AATAAAAACTGAAGCTCCCACTAAGGGACAAGAACCTGTGTCTAAG
Seq C2 exon
GAAACAGCAAGACATAGTAGAGCTGAAGGAGAGCCAGGAGCATCACATTCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX1-25/27=23-27
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.708 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGTTTGTATCCCAACTTCTGA
R:
TTCCAGAATGTGATGCTCCTGG
Band lengths:
92-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: