BtaEX6053524 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53804794-53837557:+
Coord C1 exon
chr10:53804794-53804830
Coord A exon
chr10:53817287-53817332
Coord C2 exon
chr10:53837502-53837557
Length
46 bp
Sequences
Splice sites
3' ss Seq
ATACTTATTTTGTTTTCAAGATT
3' ss Score
6.66
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
TTTCTGTTTGTATCCCAACTTCTGAACATCTTTCTGA
Seq A exon
ATTAAAAAATGAAGCTCCCACAAAGGAACAAGAATCTGTGTCTGAG
Seq C2 exon
GAAATTGCAAGATCTAATTTGGCTGAAGGAGAAACAGAAACATCAAATTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486-'34-37,'34-35,37-37=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.938 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGTTTGTATCCCAACTTCTGA
R:
TTTGATGTTTCTGTTTCTCCTTCAGC
Band lengths:
84-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]