HsaEX6074957 @ hg19
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56927393-56946432:-
Coord C1 exon
chr15:56946396-56946432
Coord A exon
chr15:56935150-56935195
Coord C2 exon
chr15:56927393-56927448
Length
46 bp
Sequences
Splice sites
3' ss Seq
ATACTTATCTTGTTTTCAAGATT
3' ss Score
6.58
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TTTCTGTTTGTATCCCAACTTCTGAGCACCTTTCTGA
Seq A exon
ATTAAAAAAAGAAGCTCCCGCAAAGGAACAAGAACCTGTGTCTAAG
Seq C2 exon
GAAATTGCAAGACCTAACATGGCTGAAAGAGAAACAGAAACATCAAATTCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-'25-28,'25-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.938 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTATCCCAACTTCTGAGCACC
R:
TCAGAATTTGATGTTTCTGTTTCTCT
Band lengths:
84-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)