MmuEX0053216 @ mm10
Exon Skipping
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19622128-19629206:+
Coord C1 exon
chr9:19622128-19622285
Coord A exon
chr9:19625735-19625995
Coord C2 exon
chr9:19629097-19629206
Length
261 bp
Sequences
Splice sites
3' ss Seq
TTGTATTGTGTATCTTGCAGAAA
3' ss Score
10.04
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGAAGTCACATGTGCGAAAGGATAGTTGGGGTTTCCCCTGTGTTTGGACCCTCCTGTTCCCCGAAGCGTTCTGAAGCATTCCGGGGCCTTGCGTGAACTTCTAGTTCTTCCGCCTTAGCCGCGGAGACTTCCGCTTCCTGGATTCCACCCTCAGTCTG
Seq A exon
AAAACTTCAGAATTAGTATTCTTCATAGCTATTTCTAGATGTGCTTCCCGCAGTTAATCTTTGCTGCATCTGTATGTGAGACCACCAGCTTGTGACTTTTATGCAAAACTAATAGTCTCTGCACTGCATCTGCATACCTCTTGCATTTCTGTTACTACAGAACACTGGACATATTCCACAGGTCTAACTTGGATATAGGGGCATCCTCTCAGCTTGAATTACCCGGGAAATTTGCGCCGTGAAGTAAATTAGAGGCTTAAG
Seq C2 exon
ACAAGATTGGGATCCAGTTACCAGTTATCCTTGTTGAGGAACCAAATCAGAGTTTCTACGAAGTTGCCTATGGCTGCTGGAGACAGGGGATCCTGTTAGAGAGTAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551_MULTIEX1-3/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTCACATGTGCGAAAGGA
R:
CTCCTTACTCTCTAACAGGATCCCC
Band lengths:
268-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types