MmuEX0053216 @ mm9
Exon Skipping
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19426351-19433650:+
Coord C1 exon
chr9:19426351-19426729
Coord A exon
chr9:19430360-19430439
Coord C2 exon
chr9:19433541-19433650
Length
80 bp
Sequences
Splice sites
3' ss Seq
ACACTGGACATATTCCACAGGTC
3' ss Score
7.59
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGAAACTACATTTCCCATAAACCATTTCAATCTCATTTAGAAGCAATTAATCGGTTTCGCGAGAGTTCCTAGTTCACCAAGAATGCACGGCTCATTAAGGTTATCAAACTCCATTTCCCAAGATGCACGCCGTGAAGGTTTCACGTTATAAAAGGCTTATGAAGTTTCGCGAGATTTCGAAGACGGACGTGAAGTAGAAGCCATTGCTTCGGGGAGCTAGTGGAAGTCACATGTGCGAAAGGATAGTTGGGGTTTCCCCTGTGTTTGGACCCTCCTGTTCCCCGAAGCGTTCTGAAGCATTCCGGGGCCTTGCGTGAACTTCTAGTTCTTCCGCCTTAGCCGCGGAGACTTCCGCTTCCTGGATTCCACCCTCAGTCTG
Seq A exon
GTCTAACTTGGATATAGGGGCATCCTCTCAGCTTGAATTACCCGGGAAATTTGCGCCGTGAAGTAAATTAGAGGCTTAAG
Seq C2 exon
ACAAGATTGGGATCCAGTTACCAGTTATCCTTGTTGAGGAACCAAATCAGAGTTTCTACGAAGTTGCCTATGGCTGCTGGAGACAGGGGATCCTGTTAGAGAGTAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551_MULTIEX1-3/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGTTCTGAAGCATTCCGG
R:
CCTGTCTCCAGCAGCCATAGG
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: