MmuEX0053255 @ mm10
Exon Skipping
Gene
ENSMUSG00000044807 | Zfp354c
Description
zinc finger protein 354C [Source:MGI Symbol;Acc:MGI:1353621]
Coordinates
chr11:50817193-50817935:-
Coord C1 exon
chr11:50817793-50817935
Coord A exon
chr11:50817289-50817293
Coord C2 exon
chr11:50817193-50817211
Length
5 bp
Sequences
Splice sites
3' ss Seq
TGAACTTCTCTGCTTTCTAGGTC
3' ss Score
10.6
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGCCTGTGACCTTCAGGGATGTGGCCGTGTCCTTCAGCCAGGATGAGTGGTTGCACCTGGACCCTGCTCAGAGAAGCCTGTACCGAGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGGGTAAGAGGCTTGCTGG
Seq A exon
GTCAG
Seq C2 exon
GGTTTCAGGCTTCAATACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044807-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.406
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types